Os08g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.8 | 0.3 | 10.3 | 1.28 | 0.615 | -1.06 | 0.452 | -0.906 | 0.356 | 3.67 | 29.17 | 257 | -- | -- |
| 41.44 | 0.3 | 10.3 | 1.12 | 0.631 | -1.08 | 0.265 | -- | 0.325 | 3.62 | 30.51 | 224 | -- | -- |
| 41.26 | 0.299 | 10.3 | 1.22 | 0.62 | -1.07 | -- | -0.632 | 0.336 | 3.85 | 29.12 | 267 | -- | -- |
| 41.59 | 0.3 | 10.3 | 1.11 | 0.622 | -1.07 | -- | -- | 0.324 | 3.74 | 30.37 | 239 | -- | -- |
| 44.77 | 0.312 | 10.3 | 1.22 | -- | -0.946 | -- | -0.846 | 0.348 | -- | 26.5 | 2582 | -- | -- |
| 56.2 | 0.351 | 10.2 | 1.38 | 0.296 | -- | 0.191 | -- | 0.532 | 2.94 | -- | -- | -- | -- |
| 56.3 | 0.351 | 10.2 | 1.38 | 0.299 | -- | -- | -- | 0.531 | 3.19 | -- | -- | -- | -- |
| 45.97 | 0.316 | 10.3 | 1.02 | -- | -0.883 | -- | -- | 0.306 | -- | 27.84 | 2584 | -- | -- |
| 70.61 | 0.391 | 10.3 | -- | 0.754 | -1.52 | -- | -- | 0.133 | 3.93 | 29.94 | 238 | -- | -- |
| 61.38 | 0.366 | 10.2 | 1.39 | -- | -- | -- | -- | 0.539 | -- | -- | -- | -- | -- |
| 106.19 | 0.482 | 10.3 | -- | 0.326 | -- | -- | -- | 0.377 | 3.19 | -- | -- | -- | -- |
| 52.94 | 0.339 | 10.3 | -- | -- | -1.36 | -- | -- | 0.0476 | -- | 24.34 | 35722 | -- | -- |
| 112.23 | 0.494 | 10.3 | -- | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 12 | 40.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 18 | 40.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 38 | 40.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 86 | 40.84 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 88 | 40.85 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 93 | 40.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 94 | 40.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 95 | 40.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 183 | 41.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 238 | 41.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 370 | 41.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 403 | 41.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 404 | 41.43 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 416 | 41.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 598 | 41.66 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 609 | 41.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 642 | 41.71 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 653 | 41.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 791 | 41.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 843 | 41.84 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 857 | 41.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 923 | 41.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 938 | 41.90 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 973 | 41.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 991 | 41.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 996 | 41.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 19 |