Os08g0560000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os08g0560000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 637.84 | 1.19 | 6.15 | -0.325 | 2.14 | -3.58 | 0.588 | 0.76 | -0.212 | 22.1 | 66.7 | 967 | 10.5 | -- |
| 638.23 | 1.18 | 6.15 | -0.355 | 2.15 | -3.5 | 0.844 | -- | -0.204 | 22 | 66.82 | 971 | 10.9 | -- |
| 638.74 | 1.18 | 6.14 | -0.309 | 2.15 | -3.57 | -- | 1.21 | -0.203 | 22.1 | 66.45 | 971 | 10.8 | -- |
| 640.93 | 1.18 | 6.15 | -0.396 | 2.13 | -3.51 | -- | -- | -0.21 | 22.1 | 66.64 | 971 | 10.7 | -- |
| 762.41 | 1.29 | 5.91 | -0.45 | -- | -2.67 | -- | 0.113 | 0.539 | -- | 71 | 1447 | 11.4 | -- |
| 962.67 | 1.45 | 6.05 | -0.788 | 1.15 | -- | 0.944 | -- | 0.14 | 20.6 | -- | -- | -- | -- |
| 965.5 | 1.46 | 6.05 | -0.82 | 1.14 | -- | -- | -- | 0.139 | 20.7 | -- | -- | -- | -- |
| 758.96 | 1.28 | 5.95 | -0.579 | -- | -2.51 | -- | -- | 0.411 | -- | 71 | 1440 | 9.92 | -- |
| 644.93 | 1.18 | 6.14 | -- | 2.15 | -3.54 | -- | -- | -0.166 | 22.1 | 66.6 | 973 | 10.9 | -- |
| 1039.73 | 1.51 | 6.02 | -0.821 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 983.21 | 1.47 | 6.03 | -- | 1.15 | -- | -- | -- | 0.231 | 20.7 | -- | -- | -- | -- |
| 767.11 | 1.29 | 5.93 | -- | -- | -2.61 | -- | -- | 0.521 | -- | 70.58 | 1441 | 10.5 | -- |
| 1057.53 | 1.52 | 6 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 685.29 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 2 | 686.29 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 3 | 687.56 | humidity | 70 | 720 | < th | dose independent | sin | 14 | NA |
| 5 | 687.87 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 25 | 690.36 | humidity | 70 | 1440 | > th | dose independent | sin | 16 | NA |
| 31 | 691.57 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 32 | 691.70 | humidity | 70 | 1440 | < th | dose independent | sin | 17 | NA |
| 35 | 692.31 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 36 | 692.43 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 62 | 694.75 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 64 | 694.88 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 75 | 694.91 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 97 | 695.70 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 100 | 695.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 129 | 696.63 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 144 | 697.47 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 180 | 698.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 244 | 700.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 248 | 700.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 282 | 701.31 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 321 | 702.34 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 322 | 702.56 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 339 | 702.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 345 | 702.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 355 | 703.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 428 | 704.95 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 516 | 706.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 546 | 707.08 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 551 | 707.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 594 | 707.28 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 681 | 708.43 | temperature | 30 | 14400 | > th | dose dependent | sin | 13 | NA |
| 727 | 709.42 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 747 | 710.51 | humidity | 60 | 1440 | > th | dose dependent | rect. | 19 | 1 |
| 826 | 711.93 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 849 | 712.45 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 856 | 712.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 877 | 713.67 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 891 | 713.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 13 |
| 904 | 713.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 909 | 713.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 15 |
| 920 | 713.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 936 | 714.13 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 953 | 714.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |