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Os08g0559600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0205) R2 : 0.569
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.1 (0.0524) R2dC : 0.417 R2C : 0.388
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.524 (0.0432) R2dN8 : 0.18 R2N8 : 0.152
σ : 0.387
deviance : 68.34
__
_____
C
peak time of C : 16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.51 0.353 11.4 -0.0794 0.776 0.674 0.47 -0.355 -0.659 15 40.43 711 -- --
56.68 0.351 11.4 -0.0574 0.775 0.663 0.395 -- -0.655 15 40.45 713 -- --
57.12 0.352 11.4 -0.0511 0.78 0.675 -- -0.145 -0.649 14.9 40.69 700 -- --
57.13 0.352 11.4 -0.0374 0.777 0.67 -- -- -0.642 14.9 40.7 710 -- --
76.79 0.408 11.4 -0.0404 -- 1.31 -- 0.176 -0.679 -- 36.41 510 -- --
66.52 0.382 11.4 0.0376 1.1 -- 0.792 -- -0.523 16.1 -- -- -- --
68.28 0.387 11.4 0.047 1.1 -- -- -- -0.519 16 -- -- -- --
70.02 0.39 11.3 -0.0841 -- 1.36 -- -- -0.599 -- 21.01 496 -- --
57.16 0.352 11.4 -- 0.771 0.677 -- -- -0.645 14.9 40.69 711 -- --
134.26 0.541 11.4 0.00204 -- -- -- -- -0.548 -- -- -- -- --
68.34 0.387 11.4 -- 1.1 -- -- -- -0.524 16 -- -- -- --
61.84 0.366 11.4 -- -- 1.14 -- -- -0.596 -- 3.041 501 -- --
134.26 0.541 11.4 -- -- -- -- -- -0.549 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.57 radiation 40 720 < th dose independent rect. 11 2
2 54.65 radiation 40 720 < th dose dependent rect. 9 5
3 54.77 radiation 20 720 > th dose independent rect. 9 6
11 55.06 radiation 40 720 < th dose independent rect. 8 6
12 55.22 radiation 40 720 < th dose dependent rect. 11 2
14 55.28 radiation 20 720 < th dose independent rect. 9 5
32 55.66 radiation 40 720 < th dose independent rect. 6 8
33 55.67 radiation 10 720 > th dose dependent rect. 9 5
34 55.67 radiation 40 720 < th dose dependent rect. 21 17
37 55.71 radiation 40 720 < th dose independent rect. 4 16
40 55.74 wind 1 43200 > th dose independent rect. 4 6
63 55.79 radiation 40 720 < th dose dependent sin 23 NA
64 55.79 radiation 40 720 < th dose dependent rect. 4 16
67 55.81 radiation 40 720 < th dose dependent rect. 6 17
70 55.83 radiation 40 720 < th dose dependent rect. 6 9
76 55.88 radiation 40 720 < th dose independent rect. 8 15
77 55.89 radiation 40 720 > th dose independent rect. 11 2
78 55.90 radiation 40 720 < th dose independent sin 23 NA
101 55.96 radiation 40 720 < th dose independent rect. 21 17
107 55.98 radiation 20 720 < th dose independent rect. 8 16
109 56.00 radiation 40 720 < th dose dependent rect. 8 16
112 56.02 radiation 40 720 < th dose dependent rect. 6 14
119 56.04 radiation 40 720 < th dose independent rect. 6 16
120 56.04 radiation 40 720 < th dose independent rect. 4 18
121 56.04 radiation 40 720 < th dose dependent rect. 4 19
153 56.20 radiation 40 720 < th dose dependent rect. 19 19
154 56.21 wind 1 43200 < th dose independent rect. 4 7
162 56.25 wind 1 43200 > th dose independent rect. 4 3
171 56.27 radiation 40 720 < th dose dependent rect. 23 15
183 56.32 radiation 40 720 > th dose independent sin 4 NA
190 56.33 radiation 40 720 < th dose dependent rect. 17 22
195 56.35 wind 1 43200 < th dose independent rect. 4 3
235 56.37 radiation 40 720 < th dose independent rect. 4 10
251 56.39 radiation 40 720 < th dose independent rect. 19 19
268 56.42 wind 1 43200 < th dose independent rect. 2 11
281 56.44 wind 1 43200 > th dose independent rect. 2 9
287 56.45 wind 1 43200 < th dose dependent rect. 4 7
293 56.46 radiation 40 720 < th dose independent rect. 23 15
294 56.46 radiation 20 720 < th dose independent rect. 6 17
301 56.48 radiation 1 720 > th dose dependent rect. 18 21
305 56.49 radiation 1 720 > th dose dependent rect. 5 10
338 56.52 radiation 20 720 < th dose independent sin 22 NA
348 56.53 radiation 20 720 < th dose independent rect. 9 11
350 56.53 radiation 40 720 < th dose independent rect. 17 21
355 56.54 wind 1 43200 > th dose independent rect. 23 8
358 56.54 radiation 40 720 < th dose independent rect. 8 21
373 56.58 radiation 40 720 < th dose independent rect. 15 23
430 56.61 radiation 40 720 < th dose independent rect. 11 20
441 56.62 radiation 40 720 > th dose independent no NA NA
599 56.64 wind 1 43200 < th dose dependent rect. 2 11
600 56.64 radiation 40 720 < th dose dependent rect. 8 12
610 56.67 radiation 20 720 > th dose dependent rect. 11 2
612 56.67 radiation 40 720 < th dose dependent rect. 1 14
614 56.68 radiation 20 720 < th dose independent rect. 21 17
653 56.72 radiation 40 720 > th dose independent rect. 11 23
695 56.74 radiation 20 720 < th dose independent rect. 6 14
696 56.74 radiation 40 720 < th dose dependent rect. 6 12
726 56.77 wind 1 43200 < th dose dependent rect. 4 3
744 56.80 radiation 20 720 < th dose independent rect. 4 19
748 56.81 radiation 20 720 < th dose independent rect. 4 16
757 56.82 wind 1 43200 < th dose independent rect. 23 11
774 56.83 radiation 20 720 > th dose independent sin 1 NA
792 56.83 radiation 1 720 > th dose dependent sin 2 NA
825 56.87 wind 1 43200 < th dose independent sin 7 NA
838 56.88 radiation 40 720 < th dose independent rect. 1 13
855 56.90 wind 1 43200 < th dose independent rect. 23 8
856 56.90 radiation 20 720 < th dose independent rect. 6 9
865 56.91 wind 1 43200 > th dose independent rect. 23 11
871 56.92 radiation 40 720 < th dose independent rect. 8 23
894 56.93 radiation 20 720 < th dose independent rect. 19 19
910 56.94 radiation 40 720 < th dose dependent rect. 21 23
974 57.00 radiation 40 720 < th dose independent sin 6 NA
979 57.00 radiation 40 720 < th dose independent rect. 8 12