Os08g0556900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine proteinase (EC 3.4.22.-).
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Os08g0556900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine proteinase (EC 3.4.22.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 594.96 | 1.15 | 11.8 | -2.44 | 0.352 | 1.37 | 2.62 | 3.54 | -2.2 | 5.61 | 1005 | 4328 | -- | -- |
| 613.06 | 1.15 | 11.7 | -2.34 | 0.371 | 1.56 | 2.49 | -- | -2.25 | 5.67 | 1005 | 4306 | -- | -- |
| 611.59 | 1.15 | 11.8 | -2.4 | 0.366 | 1.39 | -- | 3.34 | -2.21 | 6.29 | 1005 | 4361 | -- | -- |
| 627.39 | 1.17 | 11.7 | -2.31 | 0.395 | 1.57 | -- | -- | -2.27 | 6.34 | 1005 | 4310 | -- | -- |
| 618.85 | 1.16 | 11.8 | -2.41 | -- | 1.38 | -- | 3.38 | -2.2 | -- | 1005 | 4352 | -- | -- |
| 688.12 | 1.23 | 11.7 | -2.52 | 0.34 | -- | 2.55 | -- | -1.9 | 5.75 | -- | -- | -- | -- |
| 703.96 | 1.24 | 11.7 | -2.51 | 0.359 | -- | -- | -- | -1.91 | 6.25 | -- | -- | -- | -- |
| 635.34 | 1.17 | 11.7 | -2.31 | -- | 1.56 | -- | -- | -2.25 | -- | 1005 | 4313 | -- | -- |
| 765.67 | 1.29 | 11.7 | -- | 0.386 | 1.82 | -- | -- | -2.15 | 6.01 | 1006 | 4313 | -- | -- |
| 710.63 | 1.25 | 11.7 | -2.5 | -- | -- | -- | -- | -1.9 | -- | -- | -- | -- | -- |
| 869.5 | 1.38 | 11.6 | -- | 0.325 | -- | -- | -- | -1.63 | 6.66 | -- | -- | -- | -- |
| 772.53 | 1.29 | 11.7 | -- | -- | 1.74 | -- | -- | -2.1 | -- | 1006 | 4336 | -- | -- |
| 875.03 | 1.38 | 11.6 | -- | -- | -- | -- | -- | -1.63 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 584.83 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 2 | 585.14 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 5 | 586.25 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 6 | 586.39 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 9 | 586.51 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 14 | 586.66 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 18 |
| 32 | 587.85 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 54 | 588.16 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 13 |
| 66 | 588.40 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 21 | 17 |
| 77 | 588.59 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 7 | NA |
| 131 | 589.44 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 6 | NA |
| 146 | 589.73 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 373 | 593.32 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 420 | 594.31 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 441 | 594.79 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 449 | 594.96 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 450 | 594.97 | atmosphere | 1005 | 4320 | > th | dose independent | no | NA | NA |
| 461 | 595.18 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 470 | 595.28 | atmosphere | 1005 | 4320 | < th | dose independent | no | NA | NA |
| 775 | 599.08 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 959 | 604.24 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 21 | 19 |
| 963 | 604.41 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 19 | 21 |