Os08g0556600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0556600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.94 | 0.257 | 12.8 | -0.331 | 0.382 | -0.381 | -0.227 | -0.785 | -0.0677 | 23.2 | 21 | 941 | -- | -- |
| 31.43 | 0.261 | 12.8 | -0.181 | 0.36 | -0.26 | -0.376 | -- | 0.00313 | 23.4 | 23.37 | 1211 | -- | -- |
| 30.11 | 0.256 | 12.8 | -0.353 | 0.385 | -0.368 | -- | -0.834 | -0.0687 | 23.2 | 21.4 | 923 | -- | -- |
| 31.91 | 0.263 | 12.8 | -0.159 | 0.363 | -0.269 | -- | -- | 0.00326 | 23.6 | 23.9 | 1248 | -- | -- |
| 38.57 | 0.289 | 12.8 | -0.397 | -- | -0.247 | -- | -0.592 | -0.0447 | -- | 23.3 | 1554 | -- | -- |
| 34.49 | 0.275 | 12.8 | -0.283 | 0.33 | -- | -0.398 | -- | -0.11 | 23.2 | -- | -- | -- | -- |
| 35.17 | 0.278 | 12.8 | -0.267 | 0.332 | -- | -- | -- | -0.109 | 23.3 | -- | -- | -- | -- |
| 38.74 | 0.291 | 12.8 | -0.174 | -- | -0.209 | -- | -- | -0.023 | -- | 23.3 | 1554 | -- | -- |
| 32.18 | 0.264 | 12.8 | -- | 0.352 | -0.307 | -- | -- | 0.0386 | 23.6 | 23.61 | 2677 | -- | -- |
| 42.07 | 0.303 | 12.8 | -0.259 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 37.04 | 0.285 | 12.8 | -- | 0.33 | -- | -- | -- | -0.0793 | 23.2 | -- | -- | -- | -- |
| 39.5 | 0.294 | 12.8 | -- | -- | -0.232 | -- | -- | 0.00441 | -- | 23.3 | 1554 | -- | -- |
| 43.84 | 0.309 | 12.8 | -- | -- | -- | -- | -- | -0.0772 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.83 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 3 | 29.86 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 8 | 29.95 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 11 | 29.97 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 17 | 29.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 23 | 30.01 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 48 | 30.07 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 54 | 30.08 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 59 | 30.09 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 73 | 30.14 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 84 | 30.15 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 16 |
| 103 | 30.19 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 20 |
| 114 | 30.20 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 136 | 30.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 149 | 30.25 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 158 | 30.26 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 170 | 30.28 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 179 | 30.28 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 197 | 30.29 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 200 | 30.30 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 204 | 30.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 258 | 30.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 271 | 30.35 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 322 | 30.38 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 356 | 30.40 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 23 |
| 429 | 30.43 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 487 | 30.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 22 |
| 490 | 30.45 | temperature | 20.0 | 720 | < th | dose independent | sin | 22 | NA |
| 511 | 30.45 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 524 | 30.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 586 | 30.48 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 598 | 30.48 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 9 |
| 617 | 30.48 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 619 | 30.49 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 657 | 30.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 12 |
| 659 | 30.50 | temperature | 10.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 684 | 30.51 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 768 | 30.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 773 | 30.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 777 | 30.52 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 780 | 30.53 | temperature | 20.0 | 720 | < th | dose independent | sin | 14 | NA |
| 875 | 30.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 23 |
| 913 | 30.56 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 17 |
| 923 | 30.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 23 |
| 963 | 30.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 966 | 30.57 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |