Os08g0556500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AAA ATPase, central region domain containing protein.
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Os08g0556500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AAA ATPase, central region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.49 | 0.237 | 11.8 | -0.0195 | 0.488 | 0.569 | -0.21 | -0.631 | 0.445 | 21.8 | 46.11 | 981 | -- | -- |
| 25.9 | 0.237 | 11.8 | -0.048 | 0.517 | 0.525 | -0.0949 | -- | 0.449 | 21.6 | 45 | 916 | -- | -- |
| 25.59 | 0.236 | 11.8 | -0.0298 | 0.49 | 0.586 | -- | -0.459 | 0.442 | 21.8 | 38.95 | 983 | -- | -- |
| 25.85 | 0.237 | 11.8 | -0.0616 | 0.504 | 0.546 | -- | -- | 0.434 | 21.6 | 38.26 | 922 | -- | -- |
| 32.43 | 0.265 | 11.8 | -0.00651 | -- | 0.373 | -- | -0.512 | 0.447 | -- | 44.76 | 1435 | -- | -- |
| 29.87 | 0.256 | 11.8 | -0.0934 | 0.316 | -- | -0.107 | -- | 0.423 | 21.3 | -- | -- | -- | -- |
| 29.91 | 0.256 | 11.8 | -0.0896 | 0.317 | -- | -- | -- | 0.423 | 21.3 | -- | -- | -- | -- |
| 32.91 | 0.267 | 11.8 | -0.0879 | -- | 0.4 | -- | -- | 0.459 | -- | 65.26 | 1434 | -- | -- |
| 25.95 | 0.237 | 11.8 | -- | 0.509 | 0.549 | -- | -- | 0.441 | 21.6 | 38.46 | 921 | -- | -- |
| 35.75 | 0.279 | 11.8 | -0.0882 | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
| 30.12 | 0.257 | 11.8 | -- | 0.317 | -- | -- | -- | 0.433 | 21.3 | -- | -- | -- | -- |
| 33.02 | 0.268 | 11.8 | -- | -- | 0.341 | -- | -- | 0.443 | -- | 42.78 | 1438 | -- | -- |
| 35.95 | 0.28 | 11.8 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 3 | 24.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 4 | 24.80 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 8 | 24.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 9 | 24.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 11 | 24.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 13 | 24.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 39 | 24.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 40 | 24.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 41 | 24.99 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 82 | 25.16 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 84 | 25.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 89 | 25.22 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 92 | 25.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 94 | 25.30 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 100 | 25.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 108 | 25.38 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 125 | 25.39 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 128 | 25.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 131 | 25.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 147 | 25.43 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 160 | 25.45 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 170 | 25.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 176 | 25.51 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 180 | 25.52 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 208 | 25.54 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 209 | 25.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 210 | 25.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 218 | 25.56 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 235 | 25.57 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 268 | 25.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 277 | 25.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 280 | 25.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 306 | 25.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 326 | 25.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 452 | 25.80 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 472 | 25.82 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 473 | 25.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 518 | 25.85 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 519 | 25.86 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 520 | 25.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 524 | 25.86 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 21 |
| 557 | 25.87 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 19 |
| 563 | 25.87 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 568 | 25.88 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 588 | 25.89 | humidity | 60 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 598 | 25.90 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 21 |
| 599 | 25.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 621 | 25.91 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 641 | 25.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 642 | 25.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 691 | 25.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 731 | 25.98 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 733 | 25.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 752 | 25.99 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 761 | 26.00 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 769 | 26.00 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 781 | 26.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 809 | 26.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 825 | 26.04 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 12 |
| 887 | 26.07 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 895 | 26.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 899 | 26.07 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 913 | 26.08 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 930 | 26.08 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 14 |
| 945 | 26.09 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 947 | 26.09 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 967 | 26.10 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 976 | 26.10 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 996 | 26.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |