Os08g0556400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os08g0556400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.07 | 0.364 | 10.4 | -0.0457 | 0.445 | 1.34 | 0.823 | -2.19 | -0.245 | 6.06 | 1.69 | 1471 | -- | -- |
| 65.62 | 0.377 | 10.4 | 0.202 | 0.436 | 1.46 | 0.732 | -- | -0.23 | 5.76 | 1.67 | 1477 | -- | -- |
| 61.61 | 0.366 | 10.4 | 0.000582 | 0.455 | 1.35 | -- | -2.14 | -0.248 | 6.11 | 1.7 | 1482 | -- | -- |
| 66.88 | 0.381 | 10.4 | 0.225 | 0.47 | 1.42 | -- | -- | -0.237 | 6.75 | 1.677 | 1465 | -- | -- |
| 72.02 | 0.395 | 10.4 | -0.0124 | -- | 1.36 | -- | -2.17 | -0.24 | -- | 1.84 | 1477 | -- | -- |
| 93.04 | 0.452 | 10.3 | 0.457 | 0.5 | -- | 0.434 | -- | 0.0284 | 7.03 | -- | -- | -- | -- |
| 93.34 | 0.452 | 10.3 | 0.467 | 0.501 | -- | -- | -- | 0.0285 | 7.45 | -- | -- | -- | -- |
| 77.01 | 0.409 | 10.3 | 0.229 | -- | 1.42 | -- | -- | -0.199 | -- | 1.619 | 1468 | -- | -- |
| 66.93 | 0.381 | 10.3 | -- | 0.456 | 1.55 | -- | -- | -0.197 | 6.54 | 1.1 | 1455 | -- | -- |
| 106.76 | 0.483 | 10.3 | 0.475 | -- | -- | -- | -- | 0.0365 | -- | -- | -- | -- | -- |
| 99.1 | 0.466 | 10.3 | -- | 0.506 | -- | -- | -- | -0.0236 | 7.39 | -- | -- | -- | -- |
| 77.33 | 0.41 | 10.3 | -- | -- | 1.62 | -- | -- | -0.182 | -- | 1.09 | 1465 | -- | -- |
| 112.71 | 0.496 | 10.3 | -- | -- | -- | -- | -- | -0.0162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 2 | 61.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 7 | 62.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 9 | 62.42 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 11 | 62.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 14 | 62.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 15 | 62.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 19 | 62.56 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 20 | 62.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 32 | 62.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 48 | 62.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 52 | 62.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 54 | 62.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 68 | 62.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 69 | 62.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 82 | 63.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 98 | 63.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 103 | 63.29 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 127 | 63.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 128 | 63.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 166 | 63.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 167 | 63.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 195 | 63.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 217 | 63.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 226 | 63.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 228 | 63.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 274 | 64.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 276 | 64.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 281 | 64.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 325 | 64.43 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 328 | 64.48 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 331 | 64.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 333 | 64.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 350 | 64.58 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 388 | 64.67 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 441 | 64.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 447 | 64.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 452 | 64.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 458 | 64.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 461 | 64.72 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 515 | 64.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 519 | 64.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 565 | 65.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 567 | 65.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 588 | 65.23 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 616 | 65.38 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 619 | 65.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 625 | 65.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 664 | 65.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 754 | 65.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 769 | 65.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 923 | 66.41 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 966 | 66.64 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 996 | 66.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 3 |