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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0555600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.18 (0.058) R2 : 0.21
β1 : 0.227 (0.22) R2dD : 0.00344 R2D : -0.117
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.26 (0.407) R2dE : 0.719 R2E : -0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.03 (1.03) R2dD*E : 0.398 R2D*E : -0.589
γ1 : -0.395 (0.108) R2dN8 : 0.0427 R2N8 : 0.0189
σ : 0.809
deviance : 301.98
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.9
memory length : 7290
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.05 0.797 7.17 0.0185 0.445 2.72 -1.11 5.04 -0.416 21.1 19.14 6406 -- --
311.43 0.822 6.98 0.553 0.385 1.5 -1.51 -- -0.316 20.5 19.5 6392 -- --
291.09 0.795 7.19 0.147 0.443 3.13 -- 5.85 -0.411 21.4 19 6837 -- --
313.72 0.825 6.99 0.332 0.449 1.26 -- -- -0.313 20.7 19.4 6245 -- --
301.98 0.809 7.18 0.227 -- 3.26 -- 6.03 -0.395 -- 18.9 7290 -- --
330.78 0.853 7.05 -0.526 0.416 -- -1.17 -- -0.667 21 -- -- -- --
335.51 0.858 7.05 -0.485 0.421 -- -- -- -0.666 20.9 -- -- -- --
324 0.838 6.96 0.319 -- 1.17 -- -- -0.345 -- 19.61 6133 -- --
314.97 0.827 7 -- 0.441 1.02 -- -- -0.37 20.9 19.9 6241 -- --
345.64 0.869 7.04 -0.485 -- -- -- -- -0.669 -- -- -- -- --
341.7 0.865 7.04 -- 0.422 -- -- -- -0.612 20.8 -- -- -- --
325.19 0.84 6.98 -- -- 0.966 -- -- -0.415 -- 19.72 6036 -- --
351.84 0.876 7.03 -- -- -- -- -- -0.616 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.61 humidity 80.0 14400 > th dose independent rect. 6 1
2 282.62 humidity 80.0 14400 < th dose independent rect. 6 1
3 282.68 wind 9.0 14400 < th dose independent rect. 11 2
5 283.35 wind 9.0 14400 < th dose independent rect. 6 7
6 283.74 wind 9.0 14400 < th dose independent rect. 8 5
8 283.91 wind 9.0 14400 > th dose dependent rect. 11 2
12 284.45 temperature 25.0 4320 > th dose independent rect. 23 1
13 284.63 wind 9.0 14400 > th dose independent rect. 10 3
17 285.07 humidity 90.0 14400 < th dose dependent rect. 2 3
18 285.11 humidity 80.0 14400 < th dose dependent rect. 5 2
24 285.94 wind 9.0 14400 > th dose independent rect. 7 6
38 286.98 temperature 25.0 4320 < th dose independent rect. 23 2
46 287.63 temperature 25.0 4320 < th dose independent rect. 23 4
50 287.85 humidity 80.0 14400 > th dose independent rect. 3 1
67 289.05 humidity 80.0 14400 < th dose independent rect. 3 1
69 289.18 temperature 20.0 1440 > th dose dependent rect. 24 2
79 289.68 temperature 25.0 4320 < th dose independent rect. 2 1
111 290.85 wind 9.0 14400 > th dose dependent rect. 7 6
137 291.67 temperature 10.0 1440 > th dose dependent rect. 24 1
162 292.27 wind 3.0 43200 < th dose dependent rect. 23 3
167 292.44 temperature 30.0 1440 < th dose dependent rect. 1 1
178 292.67 wind 3.0 1440 < th dose independent rect. 2 1
179 292.68 wind 9.0 14400 < th dose independent rect. 1 13
214 293.61 radiation 10.0 4320 < th dose independent rect. 11 1
273 294.62 wind 3.0 1440 > th dose independent rect. 2 1
294 295.02 wind 3.0 43200 < th dose dependent rect. 1 1
304 295.14 wind 9.0 14400 > th dose independent rect. 1 12
343 295.60 radiation 20.0 4320 < th dose dependent rect. 11 1
354 295.67 temperature 20.0 1440 < th dose independent rect. 5 1
358 295.76 atmosphere 1005.0 14400 < th dose independent rect. 23 1
364 295.79 wind 3.0 14400 < th dose dependent rect. 5 8
379 295.94 wind 3.0 14400 < th dose dependent rect. 22 1
382 295.97 wind 1.0 43200 > th dose independent rect. 19 11
384 295.98 wind 1.0 43200 < th dose independent rect. 19 10
385 296.01 temperature 20.0 4320 > th dose independent rect. 3 1
392 296.07 wind 3.0 14400 < th dose independent rect. 1 13
396 296.14 wind 1.0 14400 < th dose dependent rect. 9 4
410 296.29 wind 3.0 14400 < th dose independent rect. 5 2
416 296.32 temperature 20.0 1440 > th dose independent rect. 5 1
418 296.33 wind 3.0 14400 < th dose independent rect. 18 13
437 296.49 wind 3.0 14400 < th dose independent rect. 22 17
452 296.63 wind 3.0 14400 < th dose dependent rect. 19 19
455 296.65 wind 5.0 4320 > th dose dependent rect. 20 8
463 296.72 wind 3.0 14400 < th dose independent rect. 1 2
468 296.76 wind 3.0 14400 < th dose dependent rect. 21 19
473 296.80 wind 3.0 14400 < th dose independent rect. 19 19
477 296.85 wind 9.0 14400 < th dose independent sin 4 NA
478 296.85 wind 3.0 1440 < th dose independent rect. 15 1
490 296.94 wind 3.0 14400 < th dose independent sin 5 NA
496 296.99 wind 9.0 14400 < th dose independent rect. 10 7
503 297.02 wind 3.0 14400 > th dose independent rect. 1 13
506 297.03 humidity 80.0 1440 < th dose independent rect. 11 1
510 297.05 wind 9.0 14400 < th dose independent rect. 8 9
511 297.05 wind 9.0 14400 < th dose independent rect. 6 11
531 297.18 wind 3.0 14400 > th dose independent rect. 5 2
549 297.28 temperature 25.0 90 < th dose dependent rect. 24 22
561 297.36 temperature 25.0 1440 < th dose dependent rect. 14 14
621 297.59 radiation 10.0 4320 < th dose independent rect. 11 20
623 297.59 wind 3.0 43200 < th dose dependent rect. 20 10
633 297.63 wind 3.0 14400 > th dose independent rect. 18 14
680 297.82 wind 3.0 14400 > th dose independent rect. 1 1
683 297.82 temperature 25.0 270 < th dose dependent rect. 24 20
684 297.83 wind 3.0 14400 < th dose independent sin 11 NA
705 297.90 radiation 10.0 4320 < th dose independent rect. 11 6
709 297.91 wind 3.0 14400 < th dose independent rect. 4 10
723 297.94 precipitation 0.1 14400 > th dose dependent rect. 21 2
727 297.95 wind 3.0 14400 < th dose dependent sin 4 NA
733 297.98 wind 3.0 14400 > th dose independent sin 5 NA
762 298.06 wind 3.0 14400 < th dose independent rect. 5 8
781 298.11 wind 1.0 14400 < th dose independent rect. 21 2
806 298.20 wind 9.0 14400 < th dose independent rect. 1 16
840 298.30 temperature 25.0 1440 < th dose dependent sin 14 NA
854 298.32 wind 3.0 14400 > th dose independent rect. 19 19
862 298.35 wind 9.0 14400 > th dose independent sin 4 NA
881 298.38 wind 3.0 14400 < th dose dependent rect. 12 1
928 298.55 wind 3.0 14400 < th dose independent rect. 1 6
939 298.59 humidity 80.0 1440 > th dose independent rect. 11 1
960 298.65 wind 9.0 14400 > th dose independent rect. 9 8
970 298.68 wind 3.0 1440 < th dose dependent rect. 15 1
988 298.73 wind 3.0 14400 < th dose dependent rect. 5 2