Os08g0555200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nonaspanin (TM9SF) family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0555200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nonaspanin (TM9SF) family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.26 | 0.258 | 11.8 | -1.18 | 0.273 | 60.6 | -0.189 | 126 | 0.197 | 2.61 | 15 | 90 | -- | -- |
| 30.26 | 0.258 | 12.3 | -0.0961 | 0.273 | 1.11 | -0.189 | -- | 0.197 | 2.61 | 15 | 90 | -- | -- |
| 30.38 | 0.257 | 11.8 | -1.18 | 0.272 | 60.6 | -- | 126 | 0.198 | 2.51 | 15 | 91 | -- | -- |
| 30.38 | 0.258 | 12.3 | -0.0899 | 0.272 | 1.08 | -- | -- | 0.198 | 2.51 | 14.47 | 1019 | -- | -- |
| 34.74 | 0.274 | 11.8 | -1.19 | -- | 60.5 | -- | 125 | 0.204 | -- | 15.06 | 99 | -- | -- |
| 32.6 | 0.268 | 12.3 | -0.0504 | 0.258 | -- | -0.071 | -- | 0.209 | 2.74 | -- | -- | -- | -- |
| 32.61 | 0.267 | 12.3 | -0.0486 | 0.257 | -- | -- | -- | 0.209 | 2.68 | -- | -- | -- | -- |
| 34.69 | 0.276 | 12.3 | -0.0739 | -- | 0.958 | -- | -- | 0.206 | -- | 15.2 | 19 | -- | -- |
| 30.59 | 0.259 | 12.3 | -- | 0.269 | 1.03 | -- | -- | 0.209 | 2.51 | 14.47 | 1061 | -- | -- |
| 36.48 | 0.282 | 12.3 | -0.0377 | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
| 32.68 | 0.267 | 12.3 | -- | 0.257 | -- | -- | -- | 0.214 | 2.67 | -- | -- | -- | -- |
| 34.81 | 0.275 | 12.3 | -- | -- | 0.913 | -- | -- | 0.212 | -- | 15.18 | 28 | -- | -- |
| 36.52 | 0.282 | 12.3 | -- | -- | -- | -- | -- | 0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.05 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 2 | 29.09 | temperature | 15.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 4 | 29.29 | temperature | 15.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 5 | 29.32 | temperature | 15.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 6 | 29.34 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 9 | 29.46 | temperature | 15.0 | 720 | > th | dose independent | rect. | 13 | 8 |
| 12 | 29.55 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 5 |
| 13 | 29.56 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 19 | 29.62 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 10 |
| 23 | 29.62 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 11 |
| 33 | 29.68 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 34 | 29.71 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 35 | 29.72 | temperature | 25.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 42 | 29.81 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 14 |
| 47 | 29.83 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 12 |
| 50 | 29.85 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 5 |
| 53 | 29.86 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 54 | 29.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 55 | 29.87 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 12 |
| 56 | 29.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 59 | 29.90 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 61 | 29.91 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 3 |
| 62 | 29.91 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 63 | 29.91 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 12 |
| 66 | 29.92 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 73 | 29.95 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 2 |
| 76 | 29.96 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 16 |
| 77 | 29.96 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 80 | 29.97 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 92 | 30.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 93 | 30.00 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 3 |
| 95 | 30.00 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 110 | 30.02 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 135 | 30.05 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 138 | 30.05 | temperature | 15.0 | 720 | > th | dose independent | rect. | 18 | 7 |
| 147 | 30.05 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 160 | 30.06 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 169 | 30.07 | temperature | 20.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 181 | 30.08 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 184 | 30.08 | temperature | 15.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 186 | 30.08 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 2 |
| 192 | 30.08 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 200 | 30.09 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 3 |
| 217 | 30.10 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 235 | 30.12 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 5 |
| 239 | 30.12 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 265 | 30.14 | temperature | 15.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 266 | 30.14 | radiation | 10.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 290 | 30.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 300 | 30.17 | temperature | 15.0 | 10 | > th | dose independent | sin | 7 | NA |
| 340 | 30.17 | temperature | 15.0 | 10 | > th | dose independent | sin | 1 | NA |
| 362 | 30.17 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 374 | 30.18 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 380 | 30.18 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 381 | 30.18 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 423 | 30.20 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 451 | 30.21 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 477 | 30.22 | temperature | 15.0 | 720 | < th | dose independent | rect. | 18 | 7 |
| 491 | 30.22 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 503 | 30.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 529 | 30.23 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 553 | 30.23 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 605 | 30.24 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 1 |
| 638 | 30.24 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 645 | 30.24 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 683 | 30.25 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 691 | 30.25 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 709 | 30.25 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 712 | 30.25 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 745 | 30.26 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 747 | 30.26 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 795 | 30.26 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 797 | 30.26 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 799 | 30.26 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 804 | 30.26 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 945 | 30.26 | temperature | 15.0 | 270 | < th | dose independent | rect. | 24 | 10 |