Os08g0552600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0552600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.32 | 0.829 | 3.12 | 0.831 | 0.16 | 1.28 | -0.577 | 0.783 | 0.102 | 13.3 | 19.76 | 3959 | -- | -- |
| 312.07 | 0.823 | 3.1 | 0.929 | 0.166 | 1.11 | -0.546 | -- | 0.116 | 12.9 | 19.74 | 3942 | -- | -- |
| 312.38 | 0.823 | 3.12 | 0.83 | 0.173 | 1.26 | -- | 0.659 | 0.0991 | 11.6 | 19.75 | 3958 | -- | -- |
| 312.94 | 0.824 | 3.09 | 0.914 | 0.178 | 1.12 | -- | -- | 0.121 | 11.6 | 19.7 | 3953 | -- | -- |
| 314.25 | 0.826 | 3.12 | 0.827 | -- | 1.3 | -- | 0.739 | 0.101 | -- | 19.74 | 3939 | -- | -- |
| 332.22 | 0.854 | 3.16 | 0.286 | 0.214 | -- | -0.559 | -- | -0.154 | 13.2 | -- | -- | -- | -- |
| 333.28 | 0.855 | 3.16 | 0.266 | 0.22 | -- | -- | -- | -0.158 | 12.1 | -- | -- | -- | -- |
| 314.84 | 0.826 | 3.1 | 0.913 | -- | 1.14 | -- | -- | 0.123 | -- | 19.74 | 3813 | -- | -- |
| 321.35 | 0.835 | 3.11 | -- | 0.163 | 0.574 | -- | -- | 0.0135 | 12 | 22.4 | 2197 | -- | -- |
| 336.34 | 0.857 | 3.16 | 0.259 | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
| 335.14 | 0.856 | 3.16 | -- | 0.217 | -- | -- | -- | -0.187 | 12 | -- | -- | -- | -- |
| 322.9 | 0.837 | 3.12 | -- | -- | 0.6 | -- | -- | 0.00557 | -- | 22.45 | 2257 | -- | -- |
| 338.1 | 0.858 | 3.17 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 307.67 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 308.50 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 3 | 309.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 4 | 309.70 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 5 | 309.80 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 6 | 309.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 10 | 310.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 12 | 310.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 14 | 310.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 35 | 310.95 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 44 | 311.21 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 47 | 311.27 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 62 | 311.39 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 81 | 311.51 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 97 | 311.59 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 115 | 311.68 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 128 | 311.73 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 191 | 311.98 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 226 | 312.08 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 257 | 312.17 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 299 | 312.26 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 315 | 312.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 316 | 312.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 332 | 312.34 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 362 | 312.39 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 384 | 312.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 386 | 312.42 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 393 | 312.43 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 22 |
| 398 | 312.44 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 406 | 312.45 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 409 | 312.46 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 436 | 312.50 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 502 | 312.58 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 520 | 312.61 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 535 | 312.62 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 737 | 312.94 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 810 | 313.04 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 860 | 313.11 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 882 | 313.14 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 900 | 313.17 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 902 | 313.17 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 968 | 313.33 | temperature | 20.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 982 | 313.35 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 2 |