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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0551800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF241, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0171) R2 : 6.38e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00614 (0.036) R2dN8 : 8.24e-05 R2N8 : 6.38e-05
σ : 0.322
deviance : 47.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.9 0.315 2.88 1.09 0.0383 -9.43 -0.267 58.8 0.0152 1.65 995.9 1412 -- --
47.23 0.323 3.07 0.0127 0.065 0.0917 -0.205 -- 0.00634 2.8 995.9 1412 -- --
45.04 0.313 2.89 1.05 0.0579 -9.52 -- 59.4 0.0171 4.5 996.2 1285 -- --
45.08 0.313 3.07 -0.00777 0.0563 0.698 -- -- 0.0181 3.59 997.5 1332 -- --
45.22 0.313 2.89 1.03 -- -9.37 -- 58.6 0.0174 -- 996.2 1290 -- --
47.25 0.322 3.07 0.0139 0.0615 -- -0.215 -- 0.00576 2.64 -- -- -- --
47.32 0.322 3.07 0.019 0.0769 -- -- -- 0.00657 4.82 -- -- -- --
45.28 0.313 3.06 -0.00561 -- 0.685 -- -- 0.0199 -- 997.5 1325 -- --
45.05 0.313 3.06 -- 0.0654 0.674 -- -- 0.0205 4.69 997.5 1332 -- --
47.63 0.322 3.07 0.0219 -- -- -- -- 0.00857 -- -- -- -- --
47.33 0.322 3.07 -- 0.0773 -- -- -- 0.00446 4.81 -- -- -- --
45.28 0.313 3.06 -- -- 0.684 -- -- 0.0203 -- 997.5 1325 -- --
47.64 0.322 3.07 -- -- -- -- -- 0.00614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.74 atmosphere 1000.0 90 < th dose dependent rect. 7 2
5 42.96 atmosphere 1000.0 10 < th dose dependent rect. 7 3
17 43.22 radiation 30.0 90 > th dose independent rect. 7 1
33 43.40 radiation 30.0 90 > th dose dependent rect. 7 1
56 43.70 atmosphere 1000.0 90 < th dose independent rect. 6 1
57 43.70 atmosphere 1000.0 10 < th dose independent rect. 7 1
68 43.70 atmosphere 1000.0 10 < th dose dependent rect. 7 1
86 43.85 temperature 20.0 30 > th dose dependent rect. 2 1
88 43.88 temperature 20.0 30 > th dose independent rect. 2 1
90 43.88 humidity 80.0 30 > th dose dependent rect. 2 1
91 43.89 humidity 80.0 30 > th dose independent rect. 2 1
93 43.89 humidity 50.0 30 > th dose dependent rect. 2 1
96 43.90 wind 3.0 30 < th dose independent rect. 2 1
97 43.90 wind 3.0 30 < th dose dependent rect. 2 1
104 43.91 temperature 10.0 30 > th dose independent rect. 2 1
106 43.91 temperature 30.0 30 < th dose independent rect. 2 1
107 43.91 humidity 50.0 30 > th dose independent rect. 2 1
110 43.91 atmosphere 995.0 30 > th dose independent rect. 2 1
111 43.91 atmosphere 1005.0 30 > th dose independent rect. 2 1
112 43.91 atmosphere 1010.0 30 < th dose independent rect. 2 1
114 43.91 radiation 1.0 30 < th dose independent rect. 2 1
119 43.91 precipitation 0.1 30 < th dose independent rect. 2 1
120 43.91 temperature 10.0 30 > th dose independent rect. 3 23
121 43.91 atmosphere 995.0 30 > th dose dependent rect. 2 1
123 43.91 radiation 1.0 30 < th dose dependent rect. 2 1
128 43.91 precipitation 0.1 30 < th dose dependent rect. 2 1
137 43.97 atmosphere 1015.0 30 < th dose dependent rect. 2 1
148 44.05 temperature 30.0 30 < th dose dependent rect. 2 1
157 44.13 wind 1.0 30 > th dose independent rect. 2 1
158 44.13 temperature 25.0 270 > th dose dependent rect. 5 1
164 44.14 temperature 25.0 720 > th dose dependent rect. 3 2
180 44.21 temperature 25.0 720 > th dose dependent rect. 24 8
220 44.29 radiation 10.0 10 > th dose dependent rect. 7 1
240 44.30 atmosphere 1000.0 720 < th dose dependent rect. 1 7
243 44.31 radiation 20.0 10 > th dose independent rect. 7 1
325 44.43 atmosphere 995.0 1440 > th dose independent rect. 21 18
335 44.46 atmosphere 995.0 1440 > th dose independent rect. 3 12
343 44.48 temperature 25.0 270 > th dose independent rect. 4 3
355 44.51 wind 9.0 30 < th dose independent rect. 3 23
366 44.53 humidity 80.0 90 < th dose independent rect. 23 8
395 44.56 temperature 25.0 270 > th dose independent rect. 5 1
410 44.58 atmosphere 1000.0 720 < th dose dependent sin 8 NA
431 44.59 atmosphere 995.0 1440 > th dose independent rect. 3 22
456 44.60 temperature 25.0 720 > th dose dependent rect. 21 12
460 44.62 atmosphere 995.0 1440 > th dose independent rect. 11 14
461 44.62 atmosphere 995.0 1440 > th dose independent rect. 19 20
464 44.63 atmosphere 995.0 1440 > th dose independent rect. 7 18
500 44.66 atmosphere 995.0 1440 > th dose independent rect. 6 9
509 44.66 atmosphere 995.0 1440 > th dose independent rect. 19 22
549 44.72 atmosphere 995.0 1440 > th dose independent rect. 16 9
573 44.73 atmosphere 995.0 1440 > th dose independent rect. 18 7
574 44.73 temperature 25.0 720 > th dose independent rect. 24 8
649 44.79 atmosphere 995.0 1440 > th dose independent rect. 3 20
670 44.82 temperature 25.0 720 > th dose independent rect. 1 2
719 44.85 atmosphere 995.0 1440 > th dose independent rect. 16 23
724 44.86 atmosphere 995.0 1440 > th dose independent sin 14 NA
725 44.86 atmosphere 995.0 1440 > th dose independent sin 4 NA
730 44.86 atmosphere 995.0 1440 > th dose independent rect. 16 21
738 44.87 atmosphere 995.0 1440 > th dose independent rect. 11 22
749 44.88 atmosphere 995.0 1440 > th dose independent rect. 11 17
755 44.89 atmosphere 995.0 1440 > th dose independent sin 7 NA
815 44.91 humidity 80.0 90 < th dose independent rect. 2 5
817 44.91 humidity 80.0 90 < th dose independent rect. 22 10
820 44.91 atmosphere 995.0 1440 > th dose independent rect. 21 23
849 44.92 atmosphere 995.0 1440 > th dose independent rect. 14 23
859 44.93 humidity 80.0 90 < th dose dependent rect. 22 9
864 44.94 radiation 20.0 10 > th dose independent sin 10 NA
883 44.95 atmosphere 1000.0 90 > th dose independent rect. 21 23
896 44.96 temperature 30.0 4320 < th dose independent rect. 21 12
914 44.96 humidity 80.0 90 < th dose dependent rect. 20 12
919 44.97 atmosphere 995.0 1440 < th dose independent sin 7 NA
920 44.97 atmosphere 995.0 1440 < th dose independent rect. 14 1
968 44.97 atmosphere 995.0 1440 < th dose dependent rect. 14 1