Os08g0551700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0551700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.25 | 0.397 | 6.86 | 0.858 | 0.619 | 0.897 | 0.275 | 1.78 | 0.565 | 6.34 | 21.5 | 1446 | -- | -- |
| 81.3 | 0.42 | 6.91 | 0.521 | 0.646 | 1.01 | 0.337 | -- | 0.432 | 6.96 | 21.4 | 1291 | -- | -- |
| 70.96 | 0.392 | 6.86 | 0.895 | 0.62 | 0.87 | -- | 1.81 | 0.571 | 6.26 | 21.66 | 1453 | -- | -- |
| 78.73 | 0.413 | 6.9 | 0.393 | 0.661 | 0.852 | -- | -- | 0.475 | 6.49 | 21.4 | 1405 | -- | -- |
| 90.68 | 0.444 | 6.87 | 0.933 | -- | 0.865 | -- | 1.83 | 0.583 | -- | 21.76 | 1408 | -- | -- |
| 96.63 | 0.461 | 6.87 | 0.708 | 0.636 | -- | 0.255 | -- | 0.687 | 6.23 | -- | -- | -- | -- |
| 96.78 | 0.461 | 6.87 | 0.71 | 0.637 | -- | -- | -- | 0.686 | 6.16 | -- | -- | -- | -- |
| 98.09 | 0.461 | 6.93 | 0.408 | -- | 0.785 | -- | -- | 0.46 | -- | 21.8 | 1379 | -- | -- |
| 81.7 | 0.421 | 6.94 | -- | 0.623 | 0.921 | -- | -- | 0.387 | 6.34 | 21.5 | 1404 | -- | -- |
| 117.83 | 0.507 | 6.88 | 0.728 | -- | -- | -- | -- | 0.7 | -- | -- | -- | -- | -- |
| 110.07 | 0.491 | 6.89 | -- | 0.647 | -- | -- | -- | 0.607 | 6.11 | -- | -- | -- | -- |
| 101.86 | 0.47 | 6.94 | -- | -- | 0.943 | -- | -- | 0.405 | -- | 21.5 | 1384 | -- | -- |
| 131.81 | 0.536 | 6.9 | -- | -- | -- | -- | -- | 0.619 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.97 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 2 | 63.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 19 |
| 15 | 63.77 | wind | 3 | 14400 | < th | dose dependent | sin | 12 | NA |
| 16 | 63.77 | wind | 3 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 95 | 64.85 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 97 | 64.87 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 108 | 65.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 113 | 65.10 | wind | 3 | 14400 | < th | dose dependent | sin | 5 | NA |
| 120 | 65.14 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 145 | 65.34 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 21 |
| 163 | 65.50 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 199 | 65.67 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 237 | 65.93 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 276 | 66.15 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 282 | 66.19 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 315 | 66.38 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 330 | 66.46 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 359 | 66.64 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 360 | 66.64 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 370 | 66.71 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 372 | 66.72 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 379 | 66.77 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 450 | 67.14 | wind | 1 | 14400 | > th | dose independent | sin | 2 | NA |
| 485 | 67.21 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 488 | 67.21 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 499 | 67.24 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 603 | 67.59 | wind | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 622 | 67.66 | wind | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 648 | 67.73 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 787 | 68.10 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 17 |
| 813 | 68.17 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 908 | 68.42 | wind | 3 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 964 | 68.57 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 17 |