Os08g0550500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0550500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.94 | 0.634 | 2.78 | 0.249 | 0.19 | -2.43 | 0.199 | 11.7 | 0.0196 | 7.41 | 49.06 | 147 | -- | -- |
| 183.37 | 0.631 | 2.81 | 0.144 | 0.224 | 2.18 | -0.0317 | -- | 0.0244 | 8.98 | 48 | 146 | -- | -- |
| 181.97 | 0.628 | 2.79 | 0.241 | 0.18 | -4.15 | -- | 16 | -0.00342 | 7.35 | 48.32 | 145 | -- | -- |
| 183.09 | 0.63 | 2.82 | 0.137 | 0.222 | 2.22 | -- | -- | 0.0428 | 8.39 | 48 | 147 | -- | -- |
| 183.75 | 0.631 | 2.78 | 0.291 | -- | -4.32 | -- | 16.3 | 0.0193 | -- | 48.62 | 145 | -- | -- |
| 191.59 | 0.649 | 2.82 | 0.222 | 0.196 | -- | 0.171 | -- | 0.0176 | 8.48 | -- | -- | -- | -- |
| 191.68 | 0.648 | 2.82 | 0.227 | 0.197 | -- | -- | -- | 0.0173 | 8.33 | -- | -- | -- | -- |
| 185.22 | 0.634 | 2.82 | 0.139 | -- | 2.32 | -- | -- | 0.0279 | -- | 47.22 | 146 | -- | -- |
| 183.27 | 0.631 | 2.82 | -- | 0.212 | 2.42 | -- | -- | 0.0119 | 7.32 | 48 | 146 | -- | -- |
| 193.83 | 0.651 | 2.82 | 0.229 | -- | -- | -- | -- | 0.0195 | -- | -- | -- | -- | -- |
| 193.04 | 0.65 | 2.82 | -- | 0.198 | -- | -- | -- | -0.00796 | 8.25 | -- | -- | -- | -- |
| 185.71 | 0.635 | 2.82 | -- | -- | 2.39 | -- | -- | 0.0135 | -- | 47.41 | 146 | -- | -- |
| 195.21 | 0.652 | 2.83 | -- | -- | -- | -- | -- | -0.0059 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.87 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 9 |
| 4 | 170.21 | temperature | 20 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 6 | 170.35 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 8 | 170.39 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 6 |
| 10 | 170.40 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 4 |
| 12 | 170.40 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 15 | 170.41 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 1 |
| 16 | 170.41 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 1 |
| 25 | 170.41 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 26 | 170.41 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 144 | 172.91 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 157 | 173.25 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 177 | 173.77 | humidity | 60 | 90 | < th | dose independent | rect. | 9 | 1 |
| 196 | 174.46 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 202 | 175.30 | wind | 5 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 246 | 178.01 | temperature | 20 | 30 | > th | dose independent | sin | 22 | NA |
| 247 | 178.08 | temperature | 20 | 90 | < th | dose independent | sin | 22 | NA |
| 263 | 178.45 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 264 | 178.60 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 16 |
| 275 | 178.87 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 18 |
| 291 | 179.29 | wind | 5 | 90 | > th | dose independent | rect. | 18 | 3 |
| 315 | 180.11 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 316 | 180.16 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 5 |
| 334 | 180.19 | wind | 7 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 362 | 180.22 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 5 |
| 379 | 180.22 | humidity | 50 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 399 | 180.23 | humidity | 50 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 401 | 180.24 | humidity | 50 | 30 | < th | dose independent | sin | 13 | NA |
| 404 | 180.27 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 408 | 180.38 | humidity | 50 | 10 | < th | dose independent | rect. | 14 | 2 |
| 415 | 180.44 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 435 | 180.46 | humidity | 50 | 30 | < th | dose dependent | sin | 13 | NA |
| 436 | 180.49 | wind | 5 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 439 | 180.57 | wind | 7 | 90 | > th | dose independent | rect. | 4 | 5 |
| 441 | 180.62 | wind | 5 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 444 | 180.65 | humidity | 50 | 90 | < th | dose dependent | sin | 15 | NA |
| 445 | 180.66 | wind | 7 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 446 | 180.67 | humidity | 50 | 270 | < th | dose independent | rect. | 12 | 1 |
| 448 | 180.67 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 452 | 180.68 | wind | 5 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 508 | 180.86 | wind | 5 | 270 | > th | dose independent | rect. | 5 | 2 |
| 514 | 180.87 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 637 | 181.19 | humidity | 50 | 90 | > th | dose independent | sin | 15 | NA |
| 653 | 181.26 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 694 | 181.46 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 698 | 181.49 | humidity | 50 | 270 | < th | dose dependent | sin | 7 | NA |
| 707 | 181.55 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 726 | 181.69 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 766 | 181.77 | temperature | 20 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 770 | 181.82 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 828 | 182.13 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 868 | 182.24 | wind | 7 | 10 | < th | dose independent | sin | 11 | NA |
| 903 | 182.34 | wind | 7 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 965 | 182.59 | wind | 3 | 720 | < th | dose independent | rect. | 3 | 3 |
| 983 | 182.72 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 19 | 1 |