Os08g0550200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0550200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Multi antimicrobial extrusion protein MatE family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.82 | 0.455 | 3.19 | -0.92 | 0.153 | 3.29 | -0.1 | -19.5 | -0.00388 | 9.02 | 30.06 | 109 | -- | -- |
| 100.97 | 0.468 | 3.09 | -0.0529 | 0.167 | 1.08 | 0.0961 | -- | 0.018 | 8.21 | 33.81 | 262 | -- | -- |
| 93.73 | 0.451 | 3.19 | -0.945 | 0.163 | 3.25 | -- | -19.3 | -0.00247 | 9.19 | 30.07 | 125 | -- | -- |
| 96.95 | 0.459 | 3.1 | -0.128 | 0.198 | 0.921 | -- | -- | -0.0216 | 8.09 | 28.59 | 222 | -- | -- |
| 95.19 | 0.454 | 3.2 | -0.929 | -- | 3.25 | -- | -19.6 | -0.0036 | -- | 30.1 | 117 | -- | -- |
| 108.96 | 0.489 | 3.11 | -0.0414 | 0.177 | -- | 0.184 | -- | -0.0491 | 13.9 | -- | -- | -- | -- |
| 109.07 | 0.489 | 3.11 | -0.036 | 0.177 | -- | -- | -- | -0.0483 | 13.5 | -- | -- | -- | -- |
| 98.39 | 0.462 | 3.11 | -0.1 | -- | 0.971 | -- | -- | -0.0147 | -- | 29.03 | 111 | -- | -- |
| 97.4 | 0.46 | 3.1 | -- | 0.195 | 0.889 | -- | -- | -0.00549 | 8.27 | 28.62 | 223 | -- | -- |
| 110.99 | 0.492 | 3.11 | -0.0431 | -- | -- | -- | -- | -0.0521 | -- | -- | -- | -- | -- |
| 109.1 | 0.489 | 3.11 | -- | 0.178 | -- | -- | -- | -0.0443 | 13.5 | -- | -- | -- | -- |
| 98.71 | 0.463 | 3.11 | -- | -- | 0.944 | -- | -- | -0.00496 | -- | 29.1 | 105 | -- | -- |
| 111.04 | 0.492 | 3.11 | -- | -- | -- | -- | -- | -0.0474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.03 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 2 |
| 15 | 89.10 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 45 | 91.08 | temperature | 30 | 90 | > th | dose dependent | sin | 9 | NA |
| 46 | 91.27 | temperature | 30 | 90 | > th | dose independent | rect. | 16 | 19 |
| 51 | 91.50 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 22 |
| 76 | 92.33 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 77 | 92.33 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 81 | 92.50 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 120 | 93.24 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 121 | 93.24 | temperature | 30 | 90 | > th | dose independent | rect. | 16 | 21 |
| 122 | 93.39 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 23 |
| 138 | 93.46 | temperature | 30 | 30 | > th | dose independent | sin | 10 | NA |
| 141 | 93.60 | temperature | 30 | 270 | > th | dose dependent | sin | 4 | NA |
| 145 | 93.66 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 23 |
| 146 | 93.67 | temperature | 30 | 30 | < th | dose independent | sin | 10 | NA |
| 153 | 93.75 | radiation | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 161 | 94.02 | radiation | 10 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 182 | 94.18 | temperature | 30 | 90 | > th | dose dependent | no | NA | NA |
| 183 | 94.18 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 292 | 94.30 | temperature | 30 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 313 | 94.54 | radiation | 30 | 720 | > th | dose independent | rect. | 7 | 1 |
| 363 | 94.62 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 15 |
| 410 | 94.86 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 23 |
| 411 | 94.87 | temperature | 30 | 30 | < th | dose independent | rect. | 9 | 20 |
| 414 | 94.90 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 2 |
| 449 | 95.02 | temperature | 30 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 456 | 95.09 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 10 |
| 588 | 95.19 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 12 |
| 651 | 95.44 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 10 |
| 667 | 95.49 | temperature | 30 | 90 | > th | dose independent | no | NA | NA |
| 760 | 95.50 | temperature | 30 | 30 | < th | dose independent | rect. | 23 | 23 |
| 773 | 95.61 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 7 |
| 779 | 95.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 784 | 95.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 800 | 95.76 | radiation | 20 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 802 | 95.78 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 937 | 95.86 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 23 |
| 939 | 95.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 940 | 95.87 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 5 |
| 967 | 95.93 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 17 |