Os08g0550000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UL95.
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Os08g0550000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UL95.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.01 | 0.568 | 8.37 | 2.51 | 2.25 | 2.01 | -0.373 | -0.247 | 0.445 | 6.06 | 31.19 | 332 | -- | -- |
| 145.76 | 0.562 | 8.38 | 2.46 | 2.27 | 2.02 | -0.472 | -- | 0.432 | 5.89 | 31.5 | 402 | -- | -- |
| 146.26 | 0.563 | 8.37 | 2.52 | 2.27 | 1.99 | -- | -0.477 | 0.45 | 6.06 | 31.33 | 338 | -- | -- |
| 146.27 | 0.563 | 8.38 | 2.46 | 2.26 | 2 | -- | -- | 0.431 | 5.87 | 31.3 | 410 | -- | -- |
| 337.38 | 0.855 | 8.35 | 3.03 | -- | 4.28 | -- | -0.521 | 0.752 | -- | 38.71 | 363 | -- | -- |
| 195.12 | 0.655 | 8.45 | 1.98 | 2.83 | -- | -0.149 | -- | 0.0743 | 5.87 | -- | -- | -- | -- |
| 195.18 | 0.654 | 8.45 | 1.98 | 2.83 | -- | -- | -- | 0.0749 | 5.87 | -- | -- | -- | -- |
| 337.57 | 0.856 | 8.36 | 2.95 | -- | 4.26 | -- | -- | 0.73 | -- | 71.62 | 363 | -- | -- |
| 287.96 | 0.79 | 8.48 | -- | 2.6 | 0.928 | -- | -- | -0.0327 | 5.84 | 62.67 | 401 | -- | -- |
| 610.04 | 1.15 | 8.49 | 2.07 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 298.54 | 0.808 | 8.5 | -- | 2.86 | -- | -- | -- | -0.146 | 5.84 | -- | -- | -- | -- |
| 551.25 | 1.09 | 8.46 | -- | -- | 3.26 | -- | -- | 0.286 | -- | 38.52 | 356 | -- | -- |
| 722.63 | 1.25 | 8.55 | -- | -- | -- | -- | -- | -0.0886 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 5 | 138.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 17 | 140.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 18 | 140.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 35 | 143.62 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 21 |
| 42 | 144.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 45 | 144.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 50 | 144.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 21 |
| 81 | 145.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 84 | 145.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 20 |
| 152 | 147.19 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 185 | 147.94 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 200 | 148.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 223 | 148.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 226 | 148.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 407 | 149.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 445 | 150.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 468 | 150.17 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 531 | 150.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 532 | 150.33 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 608 | 150.54 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 4 |
| 631 | 150.61 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 672 | 150.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 738 | 150.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 744 | 150.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 784 | 150.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 824 | 151.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 909 | 151.23 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |