Os08g0549900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0549900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.68 | 0.457 | 9.38 | 1.88 | 1.37 | -0.532 | 0.332 | 0.719 | 0.615 | 10.8 | 20.2 | 283 | -- | -- |
| 95.06 | 0.454 | 9.39 | 1.88 | 1.39 | -0.812 | 0.311 | -- | 0.609 | 10.8 | 19.1 | 286 | -- | -- |
| 95.12 | 0.454 | 9.38 | 1.89 | 1.37 | -0.53 | -- | 0.741 | 0.617 | 10.7 | 20.24 | 277 | -- | -- |
| 95.36 | 0.455 | 9.4 | 1.86 | 1.37 | -0.806 | -- | -- | 0.593 | 10.7 | 19.1 | 265 | -- | -- |
| 199 | 0.657 | 9.41 | 1.64 | -- | -0.625 | -- | 0.0847 | 0.637 | -- | 22.3 | 807 | -- | -- |
| 108.4 | 0.488 | 9.42 | 1.57 | 1.34 | -- | 0.407 | -- | 0.476 | 10.6 | -- | -- | -- | -- |
| 109.07 | 0.489 | 9.42 | 1.58 | 1.34 | -- | -- | -- | 0.477 | 10.5 | -- | -- | -- | -- |
| 169.01 | 0.605 | 9.38 | 1.9 | -- | -1.15 | -- | -- | 0.792 | -- | 26.1 | 845 | -- | -- |
| 173.32 | 0.613 | 9.45 | -- | 1.36 | -0.217 | -- | -- | 0.34 | 10.5 | 20.58 | 140 | -- | -- |
| 219.17 | 0.692 | 9.45 | 1.56 | -- | -- | -- | -- | 0.471 | -- | -- | -- | -- | -- |
| 175.28 | 0.619 | 9.46 | -- | 1.33 | -- | -- | -- | 0.3 | 10.4 | -- | -- | -- | -- |
| 258.6 | 0.749 | 9.44 | -- | -- | -0.739 | -- | -- | 0.534 | -- | 25.5 | 787 | -- | -- |
| 283.48 | 0.786 | 9.49 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.36 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 2 | 87.51 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 4 | 87.89 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 5 | 87.89 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 16 | 88.04 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 18 | 88.37 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 19 | 88.37 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 27 | 88.41 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 31 | 88.96 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 32 | 89.02 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 33 | 89.16 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 46 | 89.48 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 47 | 89.57 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 55 | 89.93 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 91 | 90.06 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 119 | 90.38 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 122 | 90.59 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 21 |
| 139 | 90.88 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 159 | 91.28 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 15 |
| 164 | 91.38 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 165 | 91.41 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 19 |
| 169 | 91.51 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 172 | 91.54 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 212 | 91.90 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 230 | 92.09 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 234 | 92.11 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 239 | 92.12 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 8 |
| 304 | 92.46 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 329 | 92.64 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 8 | 16 |
| 408 | 92.83 | radiation | 10 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 446 | 92.85 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 451 | 92.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 481 | 92.92 | atmosphere | 1000 | 43200 | < th | dose dependent | sin | 20 | NA |
| 496 | 92.96 | humidity | 60 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 538 | 93.06 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 586 | 93.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 587 | 93.19 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 597 | 93.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 612 | 93.22 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 21 |
| 619 | 93.23 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 621 | 93.23 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 623 | 93.23 | atmosphere | 1000 | 43200 | < th | dose dependent | sin | 3 | NA |
| 628 | 93.24 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 638 | 93.26 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 652 | 93.28 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 674 | 93.30 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 675 | 93.30 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 681 | 93.30 | humidity | 60 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 687 | 93.31 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 691 | 93.32 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 697 | 93.33 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 718 | 93.35 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 722 | 93.36 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 742 | 93.39 | atmosphere | 995 | 43200 | > th | dose independent | sin | 18 | NA |
| 747 | 93.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 749 | 93.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 791 | 93.42 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 795 | 93.43 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 803 | 93.44 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 816 | 93.45 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 12 |
| 850 | 93.48 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 873 | 93.51 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 898 | 93.53 | atmosphere | 995 | 43200 | < th | dose independent | sin | 18 | NA |
| 944 | 93.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 995 | 93.62 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 6 | 3 |