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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0549200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 35 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0404) R2 : 0.587
β1 : 1.39 (0.147) R2dD : 0.0859 R2D : 0.103
β2 : 2.02 (0.0951) R2dC : 0.414 R2C : 0.381
β3 : -0.0153 (0.148) R2dE : 1.34e-05 R2E : -0.00181
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.03 (0.581) R2dD*E : 0.0991 R2D*E : 0.0873
γ1 : 0.125 (0.0873) R2dN8 : 0.00279 R2N8 : -0.00299
σ : 0.739
deviance : 252.08
__
_____
C
peak time of C : 22.5
E
wheather : radiation
threshold : 9.994
memory length : 1447
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.17 0.742 4.39 1.36 2.02 -0.0354 -0.894 6.03 0.125 22.5 9.997 1466 -- --
303.94 0.812 4.45 1.58 1.95 0.193 -0.764 -- 0.212 22.4 20.02 1413 -- --
252.08 0.739 4.39 1.39 2.02 -0.0153 -- 6.03 0.125 22.5 9.994 1447 -- --
301.18 0.808 4.43 1.69 1.98 0.482 -- -- 0.227 22.5 20.02 4243 -- --
415.39 0.954 4.41 1.46 -- 1.09 -- -0.412 0.123 -- 7.78 2484 -- --
306.63 0.821 4.46 1.52 1.95 -- -0.807 -- 0.146 22.4 -- -- -- --
309.28 0.824 4.46 1.55 1.96 -- -- -- 0.148 22.4 -- -- -- --
416.48 0.955 4.41 1.49 -- 1.09 -- -- 0.129 -- 7.78 2484 -- --
357.94 0.881 4.47 -- 1.97 0.698 -- -- 0.113 22.6 6.981 9953 -- --
543.67 1.09 4.4 1.58 -- -- -- -- 0.155 -- -- -- -- --
372.65 0.903 4.49 -- 1.97 -- -- -- -0.0247 22.5 -- -- -- --
430.78 0.97 4.43 -- -- 1.26 -- -- 0.0249 -- 1.66 14644 -- --
609.82 1.15 4.44 -- -- -- -- -- -0.0204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.24 humidity 80.0 43200 > th dose dependent sin 3 NA
2 242.38 humidity 80.0 43200 > th dose dependent rect. 1 19
3 242.39 humidity 80.0 43200 > th dose dependent rect. 2 21
17 242.81 humidity 80.0 43200 > th dose dependent rect. 3 12
20 242.93 precipitation 0.1 43200 > th dose independent rect. 19 1
23 243.03 radiation 10.0 1440 < th dose independent rect. 14 20
24 243.03 humidity 80.0 43200 > th dose dependent rect. 3 9
25 243.04 humidity 90.0 43200 < th dose independent rect. 24 21
32 243.16 humidity 90.0 43200 < th dose independent sin 5 NA
37 243.22 humidity 90.0 43200 < th dose independent rect. 19 22
39 243.28 humidity 90.0 43200 < th dose independent rect. 13 23
43 243.33 humidity 90.0 43200 < th dose independent rect. 24 18
46 243.34 humidity 90.0 43200 < th dose independent rect. 11 23
66 243.44 humidity 90.0 43200 < th dose independent no NA NA
82 243.52 humidity 90.0 43200 < th dose independent rect. 4 23
87 243.55 precipitation 0.1 43200 < th dose independent rect. 19 1
89 243.55 precipitation 0.1 43200 < th dose dependent rect. 19 1
90 243.56 humidity 90.0 43200 < th dose independent rect. 1 15
110 243.67 humidity 90.0 43200 < th dose independent rect. 2 23
162 244.13 humidity 90.0 43200 < th dose independent rect. 2 10
163 244.13 humidity 90.0 43200 > th dose independent rect. 24 17
189 244.35 humidity 90.0 43200 > th dose independent rect. 24 20
197 244.43 humidity 90.0 43200 < th dose independent rect. 3 8
210 244.58 humidity 80.0 43200 > th dose dependent rect. 4 7
237 244.80 humidity 90.0 43200 > th dose independent rect. 5 23
244 244.89 humidity 90.0 43200 > th dose independent sin 5 NA
246 244.89 humidity 90.0 43200 > th dose independent rect. 19 22
263 244.97 humidity 90.0 43200 > th dose independent rect. 11 23
281 245.04 humidity 90.0 43200 > th dose independent no NA NA
283 245.05 humidity 90.0 43200 > th dose independent rect. 13 23
312 245.18 radiation 10.0 1440 < th dose independent sin 13 NA
318 245.21 humidity 90.0 43200 < th dose independent rect. 11 16
329 245.25 humidity 80.0 43200 > th dose dependent rect. 15 23
342 245.31 humidity 80.0 43200 > th dose dependent no NA NA
356 245.39 humidity 90.0 43200 < th dose independent rect. 13 13
360 245.39 humidity 80.0 43200 > th dose dependent sin 18 NA
363 245.43 humidity 90.0 43200 < th dose independent sin 16 NA
382 245.51 radiation 40.0 14400 < th dose independent rect. 2 6
451 245.97 humidity 90.0 43200 > th dose independent rect. 11 15
467 246.08 humidity 80.0 43200 > th dose dependent rect. 16 8
503 246.36 humidity 90.0 43200 > th dose independent rect. 3 7
504 246.36 radiation 40.0 14400 < th dose independent rect. 21 11
508 246.37 radiation 40.0 4320 < th dose independent rect. 15 17
518 246.48 humidity 80.0 43200 > th dose dependent rect. 10 1
521 246.50 humidity 90.0 43200 > th dose independent sin 17 NA
527 246.51 humidity 80.0 43200 > th dose dependent rect. 9 23
536 246.56 radiation 40.0 14400 < th dose independent rect. 17 15
542 246.61 radiation 40.0 14400 < th dose independent rect. 7 1
556 246.73 temperature 15.0 43200 < th dose independent rect. 3 1
559 246.75 humidity 90.0 43200 < th dose independent rect. 20 2
587 246.89 temperature 15.0 43200 < th dose dependent rect. 3 1
589 246.91 humidity 90.0 43200 > th dose independent rect. 9 1
639 247.25 temperature 15.0 43200 < th dose independent rect. 3 5
640 247.26 temperature 15.0 43200 < th dose independent rect. 24 8
659 247.36 temperature 15.0 43200 > th dose independent rect. 24 9
686 247.47 humidity 90.0 43200 < th dose independent rect. 19 5
688 247.48 temperature 15.0 43200 > th dose independent rect. 1 1
692 247.50 temperature 15.0 43200 > th dose independent rect. 3 6
703 247.54 temperature 15.0 43200 < th dose dependent rect. 2 5
735 247.66 temperature 15.0 43200 > th dose independent rect. 3 1
744 247.69 temperature 15.0 43200 < th dose independent rect. 1 1
747 247.70 temperature 15.0 43200 > th dose independent rect. 5 3
772 247.78 radiation 40.0 4320 < th dose independent sin 12 NA
789 247.83 temperature 15.0 43200 > th dose independent rect. 6 1
800 247.86 humidity 90.0 43200 < th dose independent rect. 9 1
806 247.88 temperature 15.0 43200 < th dose independent rect. 5 1
827 247.96 temperature 15.0 43200 > th dose independent rect. 24 14
845 248.02 temperature 15.0 43200 > th dose independent sin 6 NA
849 248.03 humidity 90.0 43200 > th dose independent rect. 19 3
883 248.10 temperature 15.0 43200 < th dose independent sin 7 NA
935 248.21 humidity 80.0 43200 < th dose independent rect. 13 1
953 248.26 humidity 90.0 43200 > th dose independent rect. 7 1
974 248.29 radiation 10.0 4320 < th dose independent rect. 17 3