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Os08g0548700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0171) R2 : 0.757
β1 : 1.74 (0.0627) R2dD : 0.427 R2D : 0.292
β2 : 0.869 (0.041) R2dC : 0.24 R2C : 0.211
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.647 (0.0365) R2dN8 : 0.224 R2N8 : 0.0774
σ : 0.322
deviance : 47.21
__
_____
C
peak time of C : 1.34
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.83 0.307 10.9 1.73 0.873 0.0193 -0.204 2.01 0.605 1.32 6.212 5089 -- --
44.65 0.311 10.9 1.65 0.921 -0.342 -0.00472 -- 0.631 1.63 6.127 4349 -- --
42.98 0.305 10.9 1.73 0.871 0.00503 -- 1.97 0.607 1.28 6.253 5049 -- --
44.19 0.31 10.9 1.62 0.894 -0.36 -- -- 0.623 1.45 6.382 4396 -- --
86.08 0.432 10.9 1.51 -- -0.503 -- 0.707 0.652 -- 6.667 4629 -- --
47.12 0.322 10.9 1.74 0.87 -- -0.145 -- 0.646 1.37 -- -- -- --
47.21 0.322 10.9 1.74 0.869 -- -- -- 0.647 1.34 -- -- -- --
85.47 0.431 10.8 1.6 -- -0.603 -- -- 0.698 -- 7.255 4500 -- --
64 0.373 11 -- 0.852 -1.27 -- -- 0.188 1.37 6.633 47520 -- --
93.78 0.453 10.8 1.78 -- -- -- -- 0.665 -- -- -- -- --
127.14 0.527 10.9 -- 0.9 -- -- -- 0.453 1.41 -- -- -- --
108.61 0.485 10.9 -- -- -1.32 -- -- 0.191 -- 6.6 47520 -- --
176.94 0.621 10.9 -- -- -- -- -- 0.468 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.73 radiation 30.0 43200 < th dose independent rect. 17 12
3 40.84 wind 7.0 4320 > th dose dependent rect. 13 3
4 40.99 wind 7.0 4320 > th dose dependent rect. 15 1
5 41.04 wind 7.0 4320 > th dose independent rect. 13 3
6 41.08 wind 5.0 4320 > th dose dependent rect. 13 1
8 41.09 wind 7.0 4320 < th dose independent rect. 13 3
11 41.14 wind 7.0 30 < th dose independent rect. 15 14
15 41.21 atmosphere 995.0 30 > th dose independent rect. 14 15
17 41.22 radiation 20.0 30 < th dose independent rect. 15 14
20 41.28 radiation 40.0 10 < th dose dependent rect. 14 15
21 41.29 atmosphere 1000.0 30 > th dose independent rect. 5 9
28 41.34 atmosphere 1015.0 30 < th dose independent rect. 14 15
39 41.39 wind 9.0 30 < th dose dependent rect. 14 15
41 41.40 atmosphere 995.0 30 > th dose dependent rect. 5 9
44 41.41 wind 9.0 30 < th dose independent rect. 5 9
45 41.42 radiation 20.0 4320 < th dose dependent rect. 3 2
50 41.45 wind 3.0 720 < th dose independent rect. 24 4
53 41.46 temperature 10.0 30 > th dose independent rect. 5 9
56 41.46 atmosphere 1015.0 30 < th dose independent rect. 5 9
57 41.46 temperature 10.0 30 > th dose independent rect. 14 15
70 41.49 atmosphere 995.0 720 > th dose independent rect. 13 23
74 41.51 precipitation 0.1 30 < th dose independent rect. 5 9
77 41.51 precipitation 0.1 30 < th dose dependent rect. 5 9
95 41.59 humidity 50.0 90 > th dose independent rect. 15 14
138 41.70 atmosphere 995.0 720 > th dose independent rect. 15 21
139 41.70 wind 7.0 4320 > th dose dependent rect. 13 8
142 41.71 radiation 30.0 4320 < th dose dependent rect. 19 10
174 41.80 wind 9.0 720 < th dose dependent rect. 24 3
180 41.82 atmosphere 995.0 720 > th dose independent rect. 16 3
189 41.85 atmosphere 995.0 30 > th dose dependent rect. 14 15
200 41.89 atmosphere 995.0 720 > th dose independent rect. 7 12
207 41.90 temperature 30.0 10 < th dose independent rect. 14 15
209 41.91 temperature 20.0 720 < th dose independent rect. 3 1
214 41.91 radiation 40.0 720 < th dose independent rect. 19 14
220 41.93 radiation 40.0 4320 < th dose dependent rect. 1 4
226 41.94 temperature 10.0 1440 > th dose independent rect. 5 10
229 41.94 temperature 10.0 1440 > th dose independent rect. 15 14
236 41.95 wind 1.0 720 > th dose independent rect. 12 10
239 41.95 precipitation 0.1 30 < th dose independent rect. 14 15
240 41.95 wind 9.0 720 < th dose dependent rect. 24 1
242 41.95 precipitation 0.1 30 < th dose dependent rect. 14 15
251 41.97 temperature 20.0 720 < th dose independent rect. 1 3
253 41.97 precipitation 0.1 720 < th dose independent rect. 10 14
256 41.97 precipitation 0.1 720 < th dose dependent rect. 10 14
257 41.98 precipitation 0.1 720 < th dose independent rect. 12 10
261 41.98 precipitation 0.1 720 < th dose dependent rect. 12 10
275 42.01 precipitation 0.1 720 < th dose independent rect. 24 10
280 42.01 precipitation 0.1 720 < th dose dependent rect. 24 10
289 42.03 precipitation 0.1 720 < th dose independent rect. 22 14
291 42.03 temperature 10.0 30 > th dose dependent rect. 5 9
292 42.03 precipitation 0.1 720 < th dose dependent rect. 22 14
331 42.08 atmosphere 995.0 720 > th dose independent rect. 7 20
355 42.10 humidity 50.0 30 > th dose dependent rect. 14 15
358 42.12 wind 9.0 720 < th dose independent rect. 24 10
361 42.12 humidity 50.0 720 > th dose independent rect. 22 14
364 42.12 atmosphere 1015.0 720 < th dose dependent rect. 12 1
370 42.13 temperature 20.0 720 < th dose independent rect. 24 9
382 42.14 atmosphere 995.0 720 > th dose independent rect. 16 11
386 42.15 humidity 50.0 720 > th dose independent rect. 24 10
396 42.16 radiation 1.0 30 > th dose independent rect. 17 21
400 42.17 temperature 10.0 720 > th dose independent rect. 24 10
402 42.17 atmosphere 995.0 720 > th dose independent rect. 24 10
405 42.17 temperature 10.0 720 > th dose independent rect. 10 14
432 42.20 temperature 10.0 720 > th dose independent rect. 12 10
435 42.20 temperature 10.0 720 > th dose independent rect. 22 14
438 42.20 atmosphere 995.0 720 > th dose independent rect. 22 14
460 42.23 radiation 30.0 720 < th dose independent rect. 15 4
464 42.23 temperature 30.0 720 < th dose dependent rect. 24 1
470 42.24 temperature 25.0 720 < th dose dependent rect. 24 4
474 42.24 temperature 10.0 30 > th dose dependent rect. 14 15
513 42.30 atmosphere 995.0 720 > th dose independent rect. 16 18
527 42.32 wind 9.0 720 < th dose independent rect. 12 1
531 42.32 precipitation 0.1 30 < th dose independent rect. 12 13
534 42.32 precipitation 0.1 30 < th dose dependent rect. 12 13
542 42.33 wind 9.0 30 < th dose independent rect. 1 11
556 42.35 humidity 50.0 30 > th dose independent rect. 1 11
569 42.36 wind 7.0 720 < th dose independent rect. 16 3
582 42.37 temperature 10.0 1440 > th dose independent rect. 2 11
585 42.37 atmosphere 995.0 1440 > th dose independent rect. 2 11
587 42.37 temperature 10.0 1440 > th dose independent rect. 13 13
594 42.38 temperature 10.0 30 > th dose independent rect. 1 11
597 42.38 atmosphere 995.0 30 > th dose independent rect. 1 11
598 42.38 atmosphere 1015.0 30 < th dose independent rect. 1 11
599 42.38 precipitation 0.1 30 < th dose independent rect. 1 11
600 42.38 temperature 10.0 30 > th dose independent rect. 12 13
602 42.38 wind 9.0 720 < th dose independent rect. 22 14
606 42.38 temperature 25.0 720 < th dose dependent rect. 23 8
607 42.38 precipitation 0.1 30 < th dose dependent rect. 1 11
631 42.41 wind 1.0 30 > th dose independent rect. 12 13
646 42.43 temperature 15.0 720 > th dose independent rect. 12 1
665 42.44 wind 1.0 720 > th dose independent rect. 12 1
667 42.44 temperature 10.0 720 > th dose independent rect. 24 1
668 42.44 temperature 30.0 720 < th dose independent rect. 24 1
669 42.44 humidity 50.0 720 > th dose independent rect. 24 1
672 42.44 atmosphere 995.0 720 > th dose independent rect. 24 1
673 42.44 radiation 1.0 720 < th dose independent rect. 24 1
678 42.44 precipitation 0.1 720 < th dose independent rect. 12 1
683 42.44 temperature 10.0 720 > th dose independent rect. 1 23
684 42.44 radiation 1.0 720 < th dose dependent rect. 24 1
689 42.44 precipitation 0.1 720 < th dose dependent rect. 12 1
694 42.45 atmosphere 995.0 720 > th dose independent rect. 12 1
695 42.45 atmosphere 1015.0 720 < th dose independent rect. 12 1
696 42.45 precipitation 0.1 720 < th dose independent rect. 24 1
702 42.45 temperature 10.0 720 > th dose independent rect. 13 23
704 42.45 precipitation 0.1 720 < th dose dependent rect. 24 1
710 42.46 wind 1.0 720 > th dose independent rect. 10 14
748 42.48 temperature 20.0 720 > th dose independent rect. 1 15
755 42.49 radiation 1.0 10 > th dose independent rect. 5 9
775 42.50 atmosphere 995.0 720 > th dose independent rect. 24 19
780 42.50 atmosphere 1015.0 30 < th dose dependent rect. 12 12
784 42.51 wind 1.0 30 > th dose independent rect. 5 9
789 42.51 temperature 20.0 720 > th dose independent rect. 2 13
807 42.52 humidity 70.0 720 > th dose independent rect. 19 12
815 42.53 radiation 1.0 4320 < th dose independent rect. 3 2
821 42.53 wind 9.0 30 < th dose independent rect. 12 13
846 42.55 wind 9.0 4320 < th dose dependent rect. 13 1
855 42.56 radiation 10.0 4320 < th dose independent rect. 19 10
943 42.64 wind 7.0 4320 > th dose independent sin 19 NA
963 42.66 wind 7.0 4320 < th dose independent sin 19 NA
993 42.68 wind 1.0 90 > th dose independent rect. 4 11
996 42.68 wind 7.0 1440 < th dose dependent rect. 17 1