FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0548600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0232) R2 : 0.288
β1 : -0.359 (0.0863) R2dD : 0.029 R2D : -0.00868
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.07 (0.213) R2dE : 0.231 R2E : -0.151
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.6 (1.55) R2dD*E : 0.44 R2D*E : 0.0351
γ1 : 0.0284 (0.0497) R2dN8 : 0.000689 R2N8 : -0.00329
σ : 0.433
deviance : 86.49
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 55.39
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.21
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.32 0.437 2.91 -0.357 0.0454 2.04 0.17 -20.8 0.0278 18.9 55 8 5.22 --
115.9 0.505 2.89 -0.109 0.00417 1.04 -0.511 -- 0.014 14.9 54 9 3.75 --
86.39 0.433 2.91 -0.357 0.0457 2.04 -- -20.7 0.0287 18.6 55.02 7 5.21 --
116.78 0.507 2.89 -0.121 0.0138 1.03 -- -- 0.011 19.8 54 9 3.75 --
86.49 0.433 2.91 -0.359 -- 2.07 -- -20.6 0.0284 -- 55.39 7 5.21 --
119.91 0.513 2.89 -0.125 0.0515 -- -0.494 -- -0.011 14.2 -- -- -- --
120.78 0.515 2.89 -0.138 0.0587 -- -- -- -0.0135 16 -- -- -- --
116.79 0.506 2.89 -0.122 -- 1.03 -- -- 0.0109 -- 54 9 3.75 --
117.17 0.507 2.89 -- 0.0145 1.05 -- -- 0.0249 19.4 54 9 3.75 --
120.97 0.514 2.89 -0.141 -- -- -- -- -0.0151 -- -- -- -- --
121.28 0.515 2.89 -- 0.0614 -- -- -- 0.00188 15.9 -- -- -- --
117.18 0.506 2.88 -- -- 1.05 -- -- 0.0247 -- 54 9 3.75 --
121.49 0.514 2.89 -- -- -- -- -- 0.00052 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.79 humidity 60 10 < th dose independent rect. 15 19
5 88.09 humidity 60 10 < th dose dependent rect. 15 19
13 89.09 wind 7 10 > th dose dependent rect. 12 1
17 90.11 humidity 60 10 < th dose independent sin 11 NA
18 90.61 humidity 60 10 > th dose independent sin 11 NA
19 92.21 humidity 60 10 < th dose dependent sin 11 NA
34 95.08 wind 7 10 > th dose independent rect. 12 1
47 97.60 radiation 40 90 > th dose independent rect. 15 1
64 97.60 radiation 40 90 > th dose dependent rect. 15 1
147 97.94 radiation 20 10 > th dose independent rect. 16 1
322 99.67 wind 1 90 < th dose dependent rect. 15 1
325 99.88 humidity 60 10 < th dose independent rect. 15 1
384 100.92 humidity 60 10 < th dose dependent rect. 15 1
418 101.90 wind 1 90 < th dose independent rect. 15 1
478 102.48 wind 3 10 < th dose dependent rect. 16 1
549 103.19 wind 3 10 < th dose independent rect. 16 1
660 104.26 radiation 40 30 < th dose independent sin 12 NA
698 104.96 wind 9 270 > th dose dependent rect. 9 1
747 105.80 humidity 60 1440 > th dose independent rect. 22 11
748 105.93 humidity 60 90 < th dose independent rect. 18 15
780 106.03 atmosphere 1005 10 < th dose dependent rect. 16 1
783 106.06 humidity 60 90 < th dose dependent rect. 18 15
787 106.08 atmosphere 1005 90 < th dose dependent rect. 14 1
812 106.11 humidity 60 270 < th dose independent rect. 8 1
814 106.11 humidity 60 10 < th dose independent rect. 10 1
842 106.11 humidity 60 270 < th dose dependent rect. 8 1
844 106.11 humidity 60 30 < th dose dependent rect. 9 1
932 106.12 wind 1 10 < th dose dependent rect. 9 1