Os08g0547300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII).
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Os08g0547300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.38 | 0.742 | 10.3 | -1.55 | 2.09 | -2.53 | 1.45 | 3.28 | 0.496 | 9.44 | 26.2 | 856 | 15.7 | 7.31 |
| 264.36 | 0.757 | 10.2 | -1.9 | 2.23 | -2.39 | 1.25 | -- | 0.462 | 9.38 | 26.2 | 907 | 15.2 | 7.97 |
| 252.04 | 0.739 | 10.3 | -1.44 | 2.12 | -2.6 | -- | 3.51 | 0.479 | 9.51 | 26.3 | 855 | 15.8 | 7.19 |
| 256.77 | 0.746 | 10.4 | -2.24 | 2.18 | -2.45 | -- | -- | 0.11 | 9.7 | 26.57 | 898 | 15.3 | 7.88 |
| 386.76 | 0.916 | 10.3 | -0.764 | -- | -3.13 | -- | 4.65 | 0.935 | -- | 26.4 | 821 | 13.8 | 6.65 |
| 435.52 | 0.978 | 10.5 | -2.77 | 2.77 | -- | 1.11 | -- | -0.299 | 11.2 | -- | -- | -- | -- |
| 440.81 | 0.983 | 10.5 | -2.73 | 2.76 | -- | -- | -- | -0.295 | 11.2 | -- | -- | -- | -- |
| 351.93 | 0.874 | 10.4 | -2.19 | -- | -2.73 | -- | -- | 0.316 | -- | 25.58 | 816 | 14.8 | 4.2 |
| 378.37 | 0.906 | 10.4 | -- | 1.94 | -2.78 | -- | -- | 0.412 | 9.47 | 26.4 | 916 | 14.5 | 8.65 |
| 917.15 | 1.42 | 10.5 | -2.79 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 636.61 | 1.18 | 10.4 | -- | 2.79 | -- | -- | -- | 0.00891 | 11.3 | -- | -- | -- | -- |
| 469.53 | 1.01 | 10.4 | -- | -- | -2.95 | -- | -- | 0.63 | -- | 25.66 | 811 | 14.9 | 4.11 |
| 1122.96 | 1.56 | 10.5 | -- | -- | -- | -- | -- | -0.00963 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 268.54 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 8 | 271.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 13 | 273.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 43 | 281.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 78 | 286.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 13 |
| 110 | 291.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 134 | 293.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 187 | 296.66 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 210 | 297.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 212 | 297.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 214 | 297.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 253 | 298.29 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 302 | 299.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 324 | 299.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 420 | 300.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 450 | 301.36 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 492 | 301.75 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 5 |
| 495 | 301.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 525 | 302.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 549 | 302.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 558 | 302.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 563 | 302.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 568 | 303.02 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 572 | 303.13 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 577 | 303.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 581 | 303.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 603 | 303.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 651 | 303.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 677 | 304.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 681 | 304.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 700 | 304.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 724 | 304.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 745 | 304.62 | temperature | 30 | 1440 | > th | dose independent | sin | 21 | NA |
| 754 | 304.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 795 | 304.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 803 | 304.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 818 | 304.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 821 | 304.99 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 947 | 305.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 949 | 305.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 960 | 305.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 982 | 305.62 | temperature | 30 | 1440 | < th | dose independent | sin | 21 | NA |
| 990 | 305.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |