Os08g0547000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0547000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.11 | 0.211 | 13.3 | 1.02 | 0.447 | -0.243 | 0.319 | 0.0486 | 0.25 | 16.1 | 11.43 | 29 | -- | -- |
| 20.12 | 0.209 | 13.3 | 1.02 | 0.45 | -0.246 | 0.35 | -- | 0.25 | 16 | 11.35 | 29 | -- | -- |
| 20.3 | 0.21 | 13.3 | 1.01 | 0.448 | -0.245 | -- | 0.155 | 0.25 | 16.1 | 12.47 | 29 | -- | -- |
| 20.43 | 0.211 | 13.3 | 1.01 | 0.449 | -0.244 | -- | -- | 0.25 | 16.1 | 12.48 | 29 | -- | -- |
| 28.52 | 0.25 | 13.3 | 0.989 | -- | -0.0883 | -- | 0.129 | 0.224 | -- | 12.47 | 29 | -- | -- |
| 22.01 | 0.22 | 13.3 | 1 | 0.37 | -- | 0.26 | -- | 0.23 | 18.2 | -- | -- | -- | -- |
| 22.18 | 0.221 | 13.3 | 0.997 | 0.371 | -- | -- | -- | 0.231 | 18.3 | -- | -- | -- | -- |
| 28.62 | 0.25 | 13.3 | 0.993 | -- | -0.0864 | -- | -- | 0.223 | -- | 12.47 | 29 | -- | -- |
| 45.95 | 0.316 | 13.3 | -- | 0.483 | -0.32 | -- | -- | 0.133 | 15.4 | 9.552 | 60 | -- | -- |
| 29.34 | 0.253 | 13.3 | 0.987 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 48.37 | 0.325 | 13.3 | -- | 0.358 | -- | -- | -- | 0.12 | 18.4 | -- | -- | -- | -- |
| 52.77 | 0.338 | 13.3 | -- | -- | -0.587 | -- | -- | 0.133 | -- | 60 | 7 | -- | -- |
| 55.03 | 0.346 | 13.3 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.28 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 5 | 19.39 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 8 | 19.44 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 5 |
| 12 | 19.52 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 9 |
| 14 | 19.52 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 17 | 19.55 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 7 |
| 18 | 19.56 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 16 |
| 23 | 19.61 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 24 | 19.63 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 5 |
| 28 | 19.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 40 | 19.68 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 22 |
| 46 | 19.70 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 49 | 19.70 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 55 | 19.74 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 58 | 19.74 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 61 | 19.75 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 63 | 19.75 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 67 | 19.75 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 73 | 19.78 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 74 | 19.78 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 87 | 19.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 89 | 19.82 | radiation | 10.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 105 | 19.86 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 115 | 19.89 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 120 | 19.90 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 126 | 19.91 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 142 | 19.93 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 144 | 19.93 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 146 | 19.93 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 153 | 19.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 158 | 19.94 | wind | 1.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 162 | 19.95 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 165 | 19.95 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 187 | 19.97 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 193 | 19.98 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 5 | 2 |
| 194 | 19.98 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 211 | 20.00 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 216 | 20.00 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 217 | 20.00 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 220 | 20.01 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 224 | 20.02 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 227 | 20.02 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 235 | 20.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 240 | 20.03 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 245 | 20.04 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 246 | 20.04 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 249 | 20.04 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 251 | 20.04 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 262 | 20.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 263 | 20.06 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 269 | 20.06 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 271 | 20.06 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 275 | 20.07 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 294 | 20.09 | radiation | 10.0 | 90 | > th | dose independent | sin | 1 | NA |
| 298 | 20.09 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 299 | 20.09 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 304 | 20.09 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 313 | 20.10 | humidity | 80.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 324 | 20.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 327 | 20.11 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 331 | 20.11 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 349 | 20.12 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 357 | 20.13 | wind | 3.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 365 | 20.13 | wind | 1.0 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 367 | 20.13 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 377 | 20.14 | wind | 1.0 | 30 | > th | dose independent | rect. | 21 | 8 |
| 383 | 20.14 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 391 | 20.15 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 406 | 20.15 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 411 | 20.16 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 1 |
| 417 | 20.16 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 418 | 20.16 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 426 | 20.17 | radiation | 10.0 | 90 | < th | dose independent | sin | 23 | NA |
| 431 | 20.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 441 | 20.18 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 444 | 20.18 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 448 | 20.18 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 449 | 20.18 | wind | 7.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 459 | 20.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 462 | 20.19 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 475 | 20.19 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 481 | 20.19 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 10 |
| 495 | 20.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 497 | 20.19 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 499 | 20.19 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 527 | 20.20 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 530 | 20.20 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 542 | 20.21 | wind | 1.0 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 564 | 20.22 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 566 | 20.22 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 569 | 20.22 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 573 | 20.22 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 581 | 20.22 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 592 | 20.22 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 595 | 20.22 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 601 | 20.22 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 621 | 20.22 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 624 | 20.22 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 642 | 20.22 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 9 |
| 648 | 20.23 | radiation | 10.0 | 30 | > th | dose independent | no | NA | NA |
| 748 | 20.24 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 754 | 20.24 | wind | 1.0 | 43200 | < th | dose dependent | sin | 17 | NA |
| 755 | 20.24 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 758 | 20.24 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 770 | 20.25 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 870 | 20.25 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 894 | 20.26 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 905 | 20.27 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 5 |
| 914 | 20.27 | radiation | 10.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 956 | 20.29 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 960 | 20.29 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 962 | 20.30 | wind | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 973 | 20.30 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 989 | 20.31 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 993 | 20.31 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 5 | 5 |