FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0546800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heat shock transcription factor 33 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.68 (0.0477) R2 : 0.9
β1 : 1.62 (0.175) R2dD : 0.0195 R2D : 0.00968
β2 : 1.2 (0.152) R2dC : 0.0216 R2C : 0.165
β3 : -5.21 (0.114) R2dE : 0.706 R2E : 0.85
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.05 (0.373) R2dD*E : 0.00719 R2D*E : 0.0107
γ1 : 0.402 (0.102) R2dN8 : 0.00457 R2N8 : 0.00276
σ : 0.893
deviance : 367.47
__
_____
C
peak time of C : 16.2
E
wheather : radiation
threshold : 7.92
memory length : 97
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 21.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
368.56 0.902 6.68 1.63 1.21 -5.26 -0.211 -2.24 0.397 16.4 8.318 96 16.9 22
384.03 0.913 6.66 1.64 1.4 -4.92 1.89 -- 0.354 15.1 7.871 102 16.8 21.9
367.47 0.893 6.68 1.62 1.2 -5.21 -- -2.05 0.402 16.2 7.92 97 16.9 21.9
393.56 0.924 6.69 1.63 1.18 -5.25 -- -- 0.387 16.4 7.809 97 16.9 21.9
395.89 0.927 6.64 1.53 -- -5.76 -- -1.69 0.408 -- 7.766 122 17 21.1
726.19 1.26 6.55 1.58 6.81 -- 2.59 -- 0.644 13.3 -- -- -- --
753.7 1.29 6.54 1.67 6.81 -- -- -- 0.658 13.3 -- -- -- --
419.95 0.954 6.65 1.61 -- -5.84 -- -- 0.483 -- 7.481 129 16.8 21.3
464.12 1 6.72 -- 1.01 -5.34 -- -- 0.239 16.6 7.453 101 16.9 21.7
3615.18 2.81 6.64 1.41 -- -- -- -- 0.516 -- -- -- -- --
827.45 1.35 6.58 -- 6.78 -- -- -- 0.472 13.3 -- -- -- --
486.1 1.03 6.69 -- -- -5.81 -- -- 0.289 -- 6.95 132 16.8 21.3
3667.32 2.83 6.67 -- -- -- -- -- 0.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 378.08 radiation 10.0 90 < th dose dependent rect. 17 22
10 417.49 radiation 10.0 90 < th dose dependent rect. 7 23
12 417.90 radiation 10.0 90 < th dose dependent rect. 9 23
13 418.04 radiation 10.0 90 < th dose dependent no NA NA
15 422.28 radiation 10.0 90 < th dose dependent rect. 13 23
16 423.34 radiation 10.0 90 < th dose dependent rect. 11 23
36 443.63 temperature 10.0 30 > th dose dependent rect. 6 12
46 451.57 humidity 90.0 30 < th dose independent rect. 6 12
53 457.66 radiation 1.0 90 > th dose independent rect. 6 12
54 457.86 radiation 10.0 90 < th dose dependent rect. 1 23
71 470.81 radiation 1.0 90 > th dose independent rect. 6 23
100 480.76 radiation 10.0 90 < th dose dependent rect. 3 23
121 492.34 radiation 10.0 90 < th dose dependent rect. 23 23
147 499.86 radiation 1.0 90 < th dose independent rect. 17 20
187 507.27 radiation 10.0 90 < th dose dependent rect. 21 23
200 507.98 radiation 1.0 90 > th dose independent no NA NA
248 508.36 radiation 1.0 90 < th dose independent rect. 13 23
250 508.46 radiation 1.0 90 < th dose independent no NA NA
252 508.57 radiation 1.0 90 < th dose independent rect. 9 23
277 510.64 radiation 10.0 90 < th dose dependent rect. 3 20
290 514.99 radiation 10.0 90 < th dose independent rect. 7 23
296 516.71 precipitation 0.1 90 < th dose independent rect. 6 12
297 516.71 precipitation 0.1 90 < th dose dependent rect. 6 12
311 518.14 radiation 1.0 90 < th dose independent rect. 1 23
313 518.66 temperature 10.0 720 > th dose dependent rect. 6 1
314 518.70 temperature 25.0 30 > th dose independent rect. 6 12
340 522.59 radiation 1.0 90 < th dose dependent sin 0 NA
348 523.71 radiation 1.0 90 < th dose independent sin 0 NA
356 525.60 radiation 1.0 90 < th dose independent rect. 3 20
357 525.67 radiation 1.0 90 < th dose independent rect. 4 17
360 525.86 radiation 1.0 90 > th dose independent sin 0 NA
363 525.95 humidity 90.0 30 < th dose independent rect. 2 16
381 528.86 temperature 15.0 720 > th dose independent rect. 18 1
386 529.23 temperature 15.0 720 > th dose independent rect. 6 1
403 533.01 humidity 60.0 10 > th dose independent rect. 18 12
412 533.87 radiation 20.0 720 < th dose independent rect. 6 1
413 533.99 temperature 15.0 90 > th dose independent rect. 18 12
414 534.09 wind 9.0 720 < th dose independent rect. 17 12
417 534.25 temperature 10.0 720 > th dose independent rect. 5 12
418 534.25 temperature 10.0 720 > th dose independent rect. 17 12
419 534.25 atmosphere 1015.0 720 < th dose independent rect. 5 12
420 534.25 radiation 30.0 720 < th dose independent rect. 17 12
423 534.26 wind 9.0 720 < th dose dependent rect. 6 1
428 534.63 precipitation 0.1 720 < th dose independent rect. 18 1
429 534.63 precipitation 0.1 720 < th dose dependent rect. 18 1
446 536.19 wind 9.0 720 < th dose independent rect. 18 1
449 536.20 humidity 50.0 720 > th dose independent rect. 18 1
450 536.20 atmosphere 1015.0 720 < th dose independent rect. 18 1
451 536.20 radiation 20.0 720 < th dose independent rect. 18 1
454 536.20 temperature 10.0 720 > th dose independent rect. 19 23
456 536.45 radiation 1.0 90 < th dose independent rect. 3 23
461 536.73 precipitation 0.1 720 < th dose independent rect. 6 1
462 536.73 precipitation 0.1 720 < th dose dependent rect. 6 1
466 537.32 wind 1.0 720 > th dose independent rect. 18 1
467 537.40 radiation 40.0 720 < th dose dependent rect. 18 1
476 537.91 temperature 15.0 720 > th dose independent rect. 5 3
477 538.01 wind 7.0 90 < th dose independent rect. 18 12
480 538.22 wind 7.0 720 < th dose independent rect. 6 1
483 538.22 temperature 30.0 720 < th dose independent rect. 6 1
484 538.22 humidity 50.0 720 > th dose independent rect. 6 1
486 538.22 atmosphere 995.0 720 > th dose independent rect. 6 1
487 538.22 atmosphere 1015.0 720 < th dose independent rect. 6 1
488 538.22 radiation 40.0 720 < th dose independent rect. 6 1
489 538.22 temperature 10.0 720 > th dose independent rect. 7 23
512 539.84 radiation 1.0 90 < th dose independent rect. 23 23
517 540.35 temperature 15.0 720 > th dose independent rect. 17 4
518 540.42 wind 9.0 90 < th dose independent rect. 6 12
519 540.51 wind 9.0 720 < th dose independent rect. 17 3
520 540.54 wind 1.0 720 > th dose independent rect. 17 3
526 540.72 atmosphere 1015.0 90 < th dose independent rect. 6 12
527 540.72 radiation 20.0 90 < th dose independent rect. 18 12
531 540.88 atmosphere 995.0 90 > th dose independent rect. 18 12
550 542.59 precipitation 0.1 720 < th dose independent rect. 5 3
551 542.59 precipitation 0.1 720 < th dose dependent rect. 5 3
556 543.01 temperature 10.0 720 > th dose independent rect. 13 4
557 543.01 atmosphere 1015.0 720 < th dose independent rect. 13 4
558 543.01 temperature 10.0 720 > th dose independent rect. 17 20
561 543.13 atmosphere 1015.0 720 < th dose independent rect. 17 3
562 543.13 radiation 30.0 720 < th dose independent rect. 17 3
564 543.13 temperature 10.0 720 > th dose independent rect. 20 21
567 543.41 wind 9.0 720 < th dose independent rect. 17 20
587 544.16 temperature 30.0 10 < th dose independent rect. 18 12
594 544.33 wind 7.0 720 < th dose independent rect. 5 3
595 544.34 temperature 10.0 720 > th dose independent rect. 1 4
596 544.34 temperature 30.0 720 < th dose independent rect. 1 4
597 544.34 humidity 50.0 720 > th dose independent rect. 1 4
600 544.34 atmosphere 995.0 720 > th dose independent rect. 1 4
601 544.34 radiation 20.0 720 < th dose independent rect. 1 4
604 544.34 temperature 10.0 720 > th dose independent rect. 5 20
606 544.45 wind 9.0 720 < th dose independent rect. 1 4
610 544.51 temperature 30.0 720 < th dose independent rect. 5 3
611 544.51 humidity 50.0 720 > th dose independent rect. 5 3
613 544.51 atmosphere 995.0 720 > th dose independent rect. 5 3
614 544.51 atmosphere 1015.0 720 < th dose independent rect. 5 3
615 544.51 temperature 10.0 720 > th dose independent rect. 8 21
617 544.57 radiation 40.0 720 < th dose dependent rect. 1 4
620 544.71 radiation 1.0 720 < th dose dependent rect. 1 4
647 545.42 radiation 1.0 720 < th dose independent rect. 1 4
649 545.50 humidity 50.0 720 > th dose independent rect. 17 12
666 546.23 temperature 15.0 30 > th dose dependent rect. 6 21
677 546.53 radiation 40.0 720 < th dose dependent rect. 17 3
694 547.51 precipitation 0.1 90 < th dose independent rect. 18 12
695 547.51 precipitation 0.1 90 < th dose dependent rect. 18 12
699 547.98 radiation 40.0 720 < th dose independent rect. 5 3
703 548.51 radiation 10.0 90 > th dose independent rect. 13 22
711 548.88 wind 9.0 720 < th dose independent rect. 9 20
720 549.48 wind 9.0 720 < th dose dependent rect. 5 3
734 550.55 temperature 10.0 270 > th dose independent rect. 1 12
735 550.55 temperature 10.0 270 > th dose independent rect. 13 12
736 550.55 atmosphere 995.0 270 > th dose independent rect. 1 12
737 550.55 atmosphere 1015.0 270 < th dose independent rect. 1 12
740 550.78 temperature 10.0 1440 > th dose independent rect. 7 12
743 550.78 temperature 10.0 1440 > th dose independent rect. 19 12
746 550.78 temperature 30.0 1440 < th dose independent rect. 19 12
750 550.78 humidity 50.0 1440 > th dose independent rect. 19 12
752 550.78 atmosphere 995.0 1440 > th dose independent rect. 19 12
753 550.78 radiation 40.0 1440 < th dose independent rect. 19 12
780 551.71 temperature 10.0 720 > th dose independent rect. 18 10
781 551.71 humidity 50.0 720 > th dose independent rect. 18 10
782 551.71 radiation 20.0 720 < th dose independent rect. 18 10
785 551.71 temperature 10.0 720 > th dose independent rect. 4 14
786 551.71 atmosphere 1015.0 720 < th dose independent rect. 4 14
815 552.41 radiation 1.0 90 > th dose dependent sin 12 NA
816 552.44 wind 9.0 720 < th dose independent rect. 18 10
837 553.26 radiation 40.0 720 < th dose dependent rect. 18 10
844 553.58 humidity 50.0 720 > th dose independent rect. 17 3
859 554.07 wind 9.0 270 < th dose independent rect. 1 12
875 554.53 wind 9.0 90 < th dose dependent rect. 6 12
887 555.37 radiation 1.0 90 > th dose independent rect. 15 23
907 556.06 radiation 30.0 90 < th dose dependent sin 11 NA
948 557.32 wind 9.0 720 < th dose independent rect. 7 23
963 557.81 precipitation 0.1 720 < th dose independent rect. 13 4
964 557.81 precipitation 0.1 720 < th dose dependent rect. 13 4
969 558.17 humidity 50.0 720 > th dose dependent rect. 6 1
994 559.79 radiation 10.0 90 < th dose dependent rect. 3 11
995 559.87 wind 9.0 270 < th dose independent rect. 13 12