Os08g0546600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0546600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 255.79 | 0.751 | 4.85 | -3.72 | 0.584 | 0.986 | -0.991 | -2.01 | -0.866 | 9.52 | 83 | 1331 | -- | -- |
| 257.95 | 0.748 | 4.82 | -3.55 | 0.62 | 0.849 | -0.82 | -- | -0.858 | 9.54 | 77.02 | 2692 | -- | -- |
| 259.31 | 0.75 | 4.85 | -3.75 | 0.58 | 0.979 | -- | -1.9 | -0.869 | 9.38 | 83.04 | 1353 | -- | -- |
| 260.17 | 0.751 | 4.81 | -3.56 | 0.624 | 0.885 | -- | -- | -0.766 | 9.44 | 75 | 2695 | -- | -- |
| 276.74 | 0.775 | 4.86 | -3.72 | -- | 0.926 | -- | -1.84 | -0.863 | -- | 85 | 1472 | -- | -- |
| 276.91 | 0.78 | 4.83 | -3.42 | 0.561 | -- | -1.01 | -- | -0.855 | 9 | -- | -- | -- | -- |
| 280.38 | 0.784 | 4.83 | -3.45 | 0.567 | -- | -- | -- | -0.856 | 8.82 | -- | -- | -- | -- |
| 280.97 | 0.781 | 4.82 | -3.56 | -- | 0.844 | -- | -- | -0.765 | -- | 75 | 2832 | -- | -- |
| 447.3 | 0.985 | 4.96 | -- | 0.189 | 1.94 | -- | -- | -0.97 | 9.21 | 67 | 35858 | -- | -- |
| 298.69 | 0.808 | 4.84 | -3.45 | -- | -- | -- | -- | -0.852 | -- | -- | -- | -- | -- |
| 594.27 | 1.14 | 4.74 | -- | 0.564 | -- | -- | -- | -0.472 | 9.28 | -- | -- | -- | -- |
| 409.11 | 0.942 | 4.69 | -- | -- | 2.82 | -- | -- | -0.181 | -- | 68 | 47520 | -- | -- |
| 612.77 | 1.16 | 4.76 | -- | -- | -- | -- | -- | -0.469 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 246.23 | wind | 1.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 2 | 247.17 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 248.75 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 6 | 248.88 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 16 |
| 7 | 248.97 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 9 | 249.01 | wind | 7.0 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 16 | 249.12 | wind | 7.0 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 20 | 249.30 | wind | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 36 | 249.81 | wind | 7.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 46 | 249.99 | wind | 7.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 54 | 250.13 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 55 | 250.14 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 58 | 250.18 | wind | 5.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 71 | 250.38 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 72 | 250.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 76 | 250.49 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 110 | 250.76 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 116 | 250.82 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 121 | 250.87 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 182 | 251.41 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 17 |
| 191 | 251.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 259 | 251.88 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 261 | 251.89 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 381 | 252.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 387 | 252.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 418 | 252.74 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 515 | 253.15 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 622 | 253.50 | wind | 7.0 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 649 | 253.56 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 661 | 253.59 | wind | 7.0 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 677 | 253.64 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 691 | 253.65 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 1 | 21 |
| 738 | 253.72 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 739 | 253.73 | wind | 7.0 | 43200 | < th | dose independent | no | NA | NA |
| 755 | 253.76 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 775 | 253.80 | wind | 5.0 | 43200 | > th | dose dependent | no | NA | NA |
| 779 | 253.81 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 805 | 253.84 | wind | 7.0 | 43200 | > th | dose independent | no | NA | NA |
| 817 | 253.86 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 828 | 253.88 | humidity | 70.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 838 | 253.88 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 909 | 253.95 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 930 | 253.98 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 942 | 253.99 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 950 | 254.00 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 992 | 254.05 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |