Os08g0545900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os08g0545900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65 | 0.379 | 3.24 | 0.167 | 0.104 | 0.247 | -0.0134 | 1.21 | -0.00632 | 6.52 | 89.04 | 5898 | -- | -- |
| 66.93 | 0.381 | 3.23 | 0.0931 | 0.143 | 0.316 | 0.0068 | -- | -0.04 | 6.89 | 91.01 | 5006 | -- | -- |
| 65 | 0.375 | 3.24 | 0.167 | 0.104 | 0.247 | -- | 1.21 | -0.00633 | 6.56 | 89 | 5897 | -- | -- |
| 66.93 | 0.381 | 3.23 | 0.0936 | 0.142 | 0.319 | -- | -- | -0.0439 | 6.8 | 91.68 | 5002 | -- | -- |
| 65.54 | 0.377 | 3.24 | 0.173 | -- | 0.252 | -- | 1.2 | -0.0044 | -- | 89 | 5838 | -- | -- |
| 68.16 | 0.387 | 3.22 | 0.0769 | 0.103 | -- | -0.0397 | -- | 0.0238 | 6.3 | -- | -- | -- | -- |
| 68.16 | 0.387 | 3.22 | 0.0765 | 0.103 | -- | -- | -- | 0.024 | 6.44 | -- | -- | -- | -- |
| 67.58 | 0.383 | 3.24 | 0.0963 | -- | 0.288 | -- | -- | -0.0336 | -- | 89 | 5652 | -- | -- |
| 67.15 | 0.382 | 3.24 | -- | 0.14 | 0.313 | -- | -- | -0.047 | 6.8 | 89.01 | 5036 | -- | -- |
| 68.72 | 0.387 | 3.22 | 0.0791 | -- | -- | -- | -- | 0.0262 | -- | -- | -- | -- | -- |
| 68.32 | 0.387 | 3.22 | -- | 0.104 | -- | -- | -- | 0.0155 | 6.4 | -- | -- | -- | -- |
| 67.82 | 0.384 | 3.24 | -- | -- | 0.272 | -- | -- | -0.036 | -- | 88 | 5644 | -- | -- |
| 68.88 | 0.387 | 3.22 | -- | -- | -- | -- | -- | 0.0174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.54 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 3 |
| 3 | 62.81 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 3 |
| 6 | 63.09 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 12 | 63.22 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 16 | 63.26 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 20 | 63.27 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 28 | 63.29 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 32 | 63.29 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 38 | 63.29 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 39 | 63.29 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 59 | 63.29 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 62 | 63.31 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 63 | 63.31 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 65 | 63.32 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 66 | 63.32 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 69 | 63.33 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 70 | 63.33 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 73 | 63.34 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 75 | 63.34 | temperature | 15.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 78 | 63.35 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 81 | 63.35 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 84 | 63.35 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 85 | 63.35 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 88 | 63.35 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 90 | 63.35 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 92 | 63.35 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 97 | 63.35 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 99 | 63.35 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 104 | 63.35 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 105 | 63.36 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 108 | 63.36 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 110 | 63.37 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 112 | 63.37 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 114 | 63.37 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 117 | 63.40 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 122 | 63.42 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 184 | 63.86 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 20 | 3 |
| 186 | 63.92 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 187 | 63.92 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 198 | 64.09 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 203 | 64.19 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 204 | 64.19 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 205 | 64.23 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 208 | 64.33 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 214 | 64.43 | humidity | 90.0 | 10 | < th | dose independent | rect. | 20 | 3 |
| 218 | 64.47 | humidity | 50.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 227 | 64.56 | temperature | 25.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 231 | 64.60 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 242 | 64.68 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 243 | 64.69 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 255 | 64.82 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 256 | 64.83 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 257 | 64.83 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 260 | 64.84 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 263 | 64.84 | temperature | 25.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 273 | 64.87 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 275 | 64.87 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 3 | 8 |
| 282 | 64.90 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 285 | 64.91 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 292 | 64.92 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 346 | 64.97 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 357 | 64.98 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 393 | 65.02 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 14 |
| 424 | 65.05 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 438 | 65.06 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 450 | 65.07 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 3 |
| 500 | 65.10 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 527 | 65.13 | humidity | 80.0 | 4320 | < th | dose independent | sin | 5 | NA |
| 535 | 65.13 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 10 |
| 559 | 65.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 592 | 65.17 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 611 | 65.18 | humidity | 80.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 641 | 65.19 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 645 | 65.19 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 686 | 65.21 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 753 | 65.23 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 839 | 65.26 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 3 |
| 846 | 65.26 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 10 |
| 986 | 65.30 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |