Os08g0545800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0545800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.02 | 0.349 | 3.03 | 0.0426 | 0.00264 | 3.12 | -0.0106 | 6.78 | -0.0272 | 10.4 | 17.23 | 660 | -- | -- |
| 64.68 | 0.377 | 2.99 | 0.0263 | 0.06 | -0.0355 | 0.336 | -- | -0.0345 | 12.2 | 17.23 | 660 | -- | -- |
| 55.02 | 0.345 | 3.03 | 0.0419 | 0.00249 | 3.11 | -- | 6.77 | -0.0269 | 10.5 | 17.24 | 649 | -- | -- |
| 63.63 | 0.372 | 2.97 | 0.169 | 0.0372 | 0.304 | -- | -- | 0.0389 | 12.2 | 23.33 | 2396 | -- | -- |
| 55.02 | 0.345 | 3.03 | 0.0422 | -- | 3.12 | -- | 6.78 | -0.027 | -- | 17.24 | 649 | -- | -- |
| 64.68 | 0.377 | 2.99 | 0.029 | 0.0601 | -- | 0.335 | -- | -0.0337 | 12.2 | -- | -- | -- | -- |
| 65.17 | 0.378 | 2.99 | 0.0421 | 0.059 | -- | -- | -- | -0.0322 | 12.2 | -- | -- | -- | -- |
| 63.72 | 0.372 | 2.97 | 0.171 | -- | 0.31 | -- | -- | 0.0402 | -- | 23.44 | 2396 | -- | -- |
| 64.21 | 0.373 | 2.98 | -- | 0.0396 | 0.222 | -- | -- | 0.0103 | 11.5 | 23.8 | 2321 | -- | -- |
| 65.39 | 0.378 | 2.99 | 0.0402 | -- | -- | -- | -- | -0.0331 | -- | -- | -- | -- | -- |
| 65.22 | 0.378 | 2.99 | -- | 0.0584 | -- | -- | -- | -0.0368 | 12.2 | -- | -- | -- | -- |
| 64.31 | 0.374 | 2.98 | -- | -- | 0.224 | -- | -- | 0.00761 | -- | 23.91 | 2321 | -- | -- |
| 65.43 | 0.378 | 2.99 | -- | -- | -- | -- | -- | -0.0375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 55.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 4 | 55.45 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 36 | 55.45 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 72 | 55.51 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 74 | 55.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 76 | 55.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 79 | 55.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 81 | 55.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 102 | 55.83 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 103 | 55.83 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 112 | 56.02 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 113 | 56.09 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 116 | 56.11 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 126 | 56.35 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 128 | 56.41 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 135 | 56.46 | temperature | 20 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 157 | 56.56 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 177 | 56.65 | temperature | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 182 | 56.68 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 1 |
| 215 | 56.85 | wind | 9 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 222 | 56.96 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 256 | 57.29 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 259 | 57.30 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 283 | 57.38 | temperature | 20 | 720 | < th | dose dependent | sin | 2 | NA |
| 309 | 57.42 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 380 | 57.57 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 391 | 57.60 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 8 |
| 418 | 57.65 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 479 | 57.70 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 481 | 57.70 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 493 | 57.70 | temperature | 20 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 504 | 57.71 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 529 | 57.76 | wind | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 548 | 57.80 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 568 | 57.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 617 | 58.00 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 621 | 58.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 630 | 58.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 790 | 58.61 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 817 | 58.69 | wind | 7 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 820 | 58.70 | wind | 7 | 4320 | > th | dose independent | rect. | 23 | 10 |
| 821 | 58.70 | wind | 7 | 4320 | < th | dose independent | rect. | 23 | 10 |
| 822 | 58.70 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 832 | 58.72 | wind | 1 | 720 | < th | dose independent | rect. | 6 | 3 |
| 836 | 58.72 | wind | 5 | 4320 | > th | dose dependent | rect. | 22 | 10 |
| 842 | 58.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 844 | 58.74 | wind | 5 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 846 | 58.75 | wind | 5 | 4320 | > th | dose independent | rect. | 1 | 3 |
| 847 | 58.75 | wind | 5 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 860 | 58.78 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 12 |
| 886 | 58.81 | wind | 1 | 720 | < th | dose independent | rect. | 7 | 1 |
| 888 | 58.81 | wind | 7 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 905 | 58.83 | wind | 7 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 906 | 58.83 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 933 | 58.86 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 949 | 58.88 | wind | 3 | 10 | < th | dose dependent | rect. | 11 | 2 |
| 989 | 58.94 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 999 | 58.95 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 6 |