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Os08g0545700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TraB determinant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0232) R2 : 0.834
β1 : -1.69 (0.0852) R2dD : 0.149 R2D : 0.0393
β2 : 1.49 (0.0637) R2dC : 0.251 R2C : 0.404
β3 : -1.92 (0.103) R2dE : 0.158 R2E : 0.276
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.991 (0.0495) R2dN8 : 0.197 R2N8 : 0.105
σ : 0.434
deviance : 86.69
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_____
C
peak time of C : 14.5
E
wheather : radiation
threshold : 2.81
memory length : 238
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.6
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.73 0.435 12.2 -1.7 1.49 -1.86 -0.0652 -1.19 -0.987 14.7 2.183 242 19.3 --
86.61 0.433 12.2 -1.68 1.51 -1.85 0.187 -- -1.01 14.6 2.85 238 19.6 --
85.49 0.431 12.2 -1.69 1.49 -1.91 -- -1.02 -0.988 14.6 2.593 238 19.4 --
86.69 0.434 12.2 -1.69 1.49 -1.92 -- -- -0.991 14.5 2.81 238 19.6 --
121.83 0.514 12.2 -1.52 -- -2.02 -- -0.261 -0.933 -- 13.5 236 2.95 --
139.49 0.554 12.2 -1.56 2.11 -- 0.536 -- -0.968 15.3 -- -- -- --
140.4 0.555 12.2 -1.55 2.12 -- -- -- -0.965 15.3 -- -- -- --
121.67 0.514 12.2 -1.56 -- -2.05 -- -- -0.965 -- 16.67 228 2.98 --
155.26 0.58 12.2 -- 1.67 -1.69 -- -- -0.807 14.3 9.999 203 20 --
393.11 0.926 12.2 -1.64 -- -- -- -- -1.02 -- -- -- -- --
204.02 0.668 12.2 -- 2.15 -- -- -- -0.792 15.3 -- -- -- --
184.24 0.632 12.2 -- -- -2.08 -- -- -0.805 -- 10 272 3.23 --
464.34 1.01 12.2 -- -- -- -- -- -0.838 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.79 radiation 10.0 270 < th dose dependent rect. 2 17
2 84.22 radiation 10.0 270 < th dose dependent rect. 1 19
3 84.23 radiation 1.0 270 < th dose independent rect. 2 17
5 85.05 radiation 40.0 270 < th dose dependent rect. 15 15
14 86.06 radiation 20.0 90 < th dose dependent rect. 4 17
20 87.21 radiation 1.0 270 > th dose independent sin 2 NA
21 87.38 radiation 1.0 270 < th dose independent sin 2 NA
30 88.05 radiation 20.0 270 < th dose independent rect. 15 15
31 88.12 radiation 1.0 270 < th dose dependent sin 1 NA
45 88.73 radiation 10.0 270 < th dose dependent rect. 2 12
55 89.06 radiation 20.0 270 < th dose dependent rect. 1 8
65 89.54 radiation 1.0 270 > th dose independent rect. 6 10
71 89.86 atmosphere 995.0 270 > th dose independent rect. 16 14
91 90.25 precipitation 0.1 270 < th dose independent rect. 5 22
92 90.25 precipitation 0.1 270 < th dose dependent rect. 5 22
94 90.30 radiation 1.0 270 < th dose independent rect. 2 13
97 90.36 precipitation 0.1 270 < th dose independent rect. 6 20
98 90.36 precipitation 0.1 270 < th dose dependent rect. 6 20
104 90.46 radiation 10.0 90 < th dose independent rect. 4 18
109 90.59 wind 9.0 270 < th dose independent rect. 6 10
127 90.92 radiation 1.0 270 < th dose independent rect. 2 8
134 91.01 precipitation 0.1 270 < th dose independent rect. 6 10
135 91.01 precipitation 0.1 270 < th dose dependent rect. 6 10
146 91.21 radiation 1.0 270 > th dose independent rect. 18 21
148 91.22 radiation 1.0 270 < th dose independent rect. 3 3
162 91.39 radiation 1.0 270 < th dose dependent rect. 3 3
183 91.73 temperature 10.0 270 > th dose independent rect. 6 10
184 91.73 atmosphere 1015.0 270 < th dose independent rect. 6 10
185 91.73 temperature 10.0 270 > th dose independent rect. 16 14
191 91.82 humidity 70.0 90 > th dose dependent rect. 3 18
203 92.07 atmosphere 995.0 270 > th dose independent rect. 1 20
222 92.39 radiation 1.0 270 > th dose independent rect. 4 11
232 92.40 wind 9.0 270 < th dose independent rect. 16 14
238 92.46 wind 9.0 270 < th dose independent rect. 6 20
242 92.51 wind 7.0 270 < th dose independent rect. 21 4
252 92.69 precipitation 0.1 270 < th dose independent rect. 21 4
253 92.69 precipitation 0.1 270 < th dose dependent rect. 21 4
257 92.71 atmosphere 995.0 270 > th dose independent rect. 2 18
263 92.76 precipitation 0.1 270 < th dose independent rect. 7 18
264 92.76 precipitation 0.1 270 < th dose dependent rect. 7 18
271 92.84 radiation 1.0 270 < th dose dependent rect. 21 4
274 92.85 temperature 10.0 270 > th dose independent rect. 21 4
275 92.85 temperature 30.0 270 < th dose independent rect. 21 4
276 92.85 humidity 50.0 270 > th dose independent rect. 21 4
279 92.85 atmosphere 995.0 270 > th dose independent rect. 21 4
280 92.85 radiation 1.0 270 < th dose independent rect. 21 4
285 92.85 temperature 10.0 270 > th dose independent rect. 1 20
298 93.02 radiation 30.0 90 < th dose dependent rect. 13 19
305 93.14 wind 9.0 270 < th dose independent rect. 2 4
306 93.14 temperature 10.0 270 > th dose independent rect. 2 4
308 93.14 temperature 30.0 270 < th dose independent rect. 2 4
309 93.14 humidity 50.0 270 > th dose independent rect. 2 4
312 93.14 atmosphere 995.0 270 > th dose independent rect. 2 4
313 93.14 atmosphere 1015.0 270 < th dose independent rect. 2 4
317 93.14 temperature 10.0 270 > th dose independent rect. 6 20
321 93.19 humidity 50.0 270 > th dose dependent rect. 2 4
349 93.67 wind 7.0 270 < th dose independent rect. 20 6
359 93.76 wind 9.0 270 < th dose independent rect. 5 22
366 93.84 atmosphere 1015.0 270 < th dose independent rect. 1 20
371 93.89 precipitation 0.1 270 < th dose independent rect. 20 6
372 93.89 precipitation 0.1 270 < th dose dependent rect. 20 6
380 94.04 atmosphere 995.0 270 > th dose independent rect. 6 9
383 94.07 temperature 10.0 270 > th dose independent rect. 20 6
384 94.07 temperature 30.0 270 < th dose independent rect. 20 6
385 94.07 humidity 50.0 270 > th dose independent rect. 20 6
388 94.07 atmosphere 995.0 270 > th dose independent rect. 20 6
389 94.07 radiation 1.0 270 < th dose independent rect. 20 6
394 94.07 temperature 10.0 270 > th dose independent rect. 2 18
395 94.07 atmosphere 1015.0 270 < th dose independent rect. 2 18
396 94.07 radiation 1.0 270 < th dose dependent rect. 20 6
433 94.32 wind 9.0 270 < th dose independent rect. 3 2
434 94.32 temperature 10.0 270 > th dose independent rect. 3 2
436 94.32 temperature 30.0 270 < th dose independent rect. 3 2
437 94.32 humidity 50.0 270 > th dose independent rect. 3 2
440 94.32 atmosphere 995.0 270 > th dose independent rect. 3 2
441 94.32 atmosphere 1010.0 270 < th dose independent rect. 3 2
446 94.32 temperature 10.0 270 > th dose independent rect. 5 22
451 94.37 humidity 50.0 270 > th dose dependent rect. 3 2
457 94.46 wind 7.0 270 < th dose independent rect. 21 14
459 94.47 humidity 50.0 270 > th dose dependent rect. 1 6
460 94.48 precipitation 0.1 270 < th dose independent rect. 2 4
461 94.48 precipitation 0.1 270 < th dose dependent rect. 2 4
462 94.50 wind 9.0 270 < th dose independent rect. 7 18
468 94.58 wind 9.0 270 < th dose independent rect. 1 20
496 94.94 wind 1.0 270 > th dose independent rect. 21 4
498 94.97 humidity 70.0 270 > th dose independent rect. 1 6
499 94.97 atmosphere 1010.0 270 < th dose independent rect. 1 6
514 95.13 precipitation 0.1 270 < th dose independent rect. 21 14
516 95.13 precipitation 0.1 270 < th dose dependent rect. 21 14
520 95.17 temperature 10.0 270 > th dose independent rect. 1 6
522 95.17 temperature 30.0 270 < th dose independent rect. 1 6
523 95.17 humidity 50.0 270 > th dose independent rect. 1 6
525 95.17 atmosphere 995.0 270 > th dose independent rect. 1 6
528 95.17 temperature 10.0 270 > th dose independent rect. 7 18
530 95.18 wind 9.0 270 < th dose independent rect. 1 6
581 95.46 wind 9.0 270 < th dose independent rect. 2 18
635 95.59 temperature 10.0 90 > th dose independent rect. 4 17
636 95.59 atmosphere 1015.0 90 < th dose independent rect. 4 17
645 95.63 humidity 50.0 270 > th dose dependent rect. 1 18
650 95.71 humidity 50.0 270 > th dose independent rect. 15 15
663 95.90 wind 1.0 270 > th dose independent rect. 20 6
667 95.94 radiation 40.0 270 < th dose independent rect. 11 10
694 96.17 atmosphere 995.0 270 > th dose dependent rect. 2 4
701 96.23 temperature 10.0 270 > th dose dependent rect. 2 4
717 96.36 atmosphere 995.0 90 > th dose independent rect. 4 17
718 96.37 wind 9.0 270 < th dose dependent rect. 21 4
722 96.40 humidity 80.0 90 > th dose independent rect. 3 18
726 96.43 precipitation 0.1 270 < th dose independent rect. 1 6
727 96.43 precipitation 0.1 270 < th dose dependent rect. 1 6
735 96.49 precipitation 0.1 270 < th dose independent rect. 3 2
738 96.49 precipitation 0.1 270 < th dose dependent rect. 3 2
739 96.49 temperature 10.0 270 > th dose dependent rect. 21 4
760 96.64 radiation 40.0 90 < th dose independent rect. 4 17
771 96.70 radiation 40.0 90 < th dose independent rect. 3 19
775 96.72 atmosphere 1015.0 270 < th dose independent rect. 21 4
814 96.81 radiation 30.0 90 < th dose dependent rect. 11 22
820 96.86 humidity 50.0 270 > th dose independent rect. 21 14
844 97.03 temperature 10.0 90 > th dose dependent rect. 8 19
851 97.06 atmosphere 995.0 270 > th dose dependent rect. 3 2
855 97.09 temperature 10.0 270 > th dose independent rect. 11 10
856 97.09 temperature 10.0 270 > th dose independent rect. 21 14
857 97.09 atmosphere 995.0 270 > th dose independent rect. 21 14
873 97.12 humidity 80.0 10 > th dose independent rect. 4 18
918 97.54 temperature 10.0 270 > th dose dependent rect. 6 9
927 97.58 temperature 10.0 270 > th dose dependent rect. 3 2
942 97.64 wind 1.0 270 > th dose independent rect. 2 4
945 97.67 wind 9.0 90 < th dose independent rect. 4 17
950 97.68 radiation 40.0 270 < th dose independent rect. 1 19
957 97.73 humidity 70.0 90 > th dose dependent rect. 3 8
967 97.79 humidity 50.0 270 > th dose independent rect. 6 9
973 97.83 wind 9.0 270 < th dose dependent rect. 2 4