Os08g0545300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0545300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAD-dependent sorbitol dehydrogenase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.21	(0.0361)	R²	:	0.777
β₁	:	1.57	(0.134)	R²_dD	:	0.0731	R²_D	:	0.0272
β₂	:	3.25	(0.0905)	R²_dC	:	0.642	R²_C	:	0.675
β₃	:	-1.06	(0.104)	R²_dE	:	0.0608	R²_E	:	0.0753
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0913	(0.0793)	R²_dN8	:	0.000755	R²_N8	:	0.000304
σ	:	0.671
deviance	:	207.45
__

_____

C
peak time of C	:	15.3
E
wheather	:	temperature
threshold	:	30.9
memory length	:	2659
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
199.81	0.664	5.39	0.027	3.21	-0.109	0.545	-7.78	0.032	15.3	30.1	1253	--	--
209.75	0.675	5.22	1.48	3.33	-1.09	1.09	--	0.0656	15.4	33.3	3302	--	--
200.74	0.66	5.39	0.0424	3.21	-0.117	--	-7.81	0.0357	15.3	30.1	1245	--	--
207.45	0.671	5.21	1.57	3.25	-1.06	--	--	0.0913	15.3	30.9	2659	--	--
768.39	1.29	5.4	0.155	--	-0.689	--	-7.44	-0.118	--	30.09	1225	--	--
253.85	0.747	5.16	1.27	3.36	--	0.93	--	0.283	15.3	--	--	--	--
256.63	0.75	5.16	1.29	3.36	--	--	--	0.288	15.3	--	--	--	--
784.22	1.3	5.23	1.64	--	-1.36	--	--	0.0197	--	31.2	1194	--	--
270.25	0.766	5.24	--	3.25	-0.833	--	--	-0.0431	15.3	30.84	2628	--	--
896.34	1.4	5.17	1.15	--	--	--	--	0.2	--	--	--	--	--
300.44	0.811	5.19	--	3.34	--	--	--	0.145	15.3	--	--	--	--
843.84	1.35	5.26	--	--	-1.28	--	--	-0.221	--	31.16	1188	--	--
931.02	1.42	5.19	--	--	--	--	--	0.0726	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	193.23	humidity	50.0	270	> th	dose dependent	rect.	19	6
3	194.25	precipitation	0.1	270	< th	dose independent	rect.	1	19
4	194.25	precipitation	0.1	270	< th	dose dependent	rect.	1	19
7	195.63	wind	5.0	43200	< th	dose dependent	rect.	1	5
15	196.50	humidity	70.0	270	> th	dose independent	rect.	19	6
18	196.56	wind	1.0	43200	> th	dose dependent	rect.	1	5
71	198.23	temperature	10.0	270	> th	dose independent	rect.	19	6
72	198.23	temperature	30.0	270	< th	dose independent	rect.	19	6
74	198.23	atmosphere	995.0	270	> th	dose independent	rect.	19	6
75	198.23	radiation	1.0	270	< th	dose independent	rect.	19	6
80	198.23	temperature	10.0	270	> th	dose independent	rect.	1	18
81	198.23	atmosphere	1015.0	270	< th	dose independent	rect.	1	18
82	198.23	radiation	1.0	270	< th	dose dependent	rect.	19	6
87	198.25	wind	9.0	270	< th	dose independent	rect.	19	6
91	198.51	wind	9.0	270	< th	dose independent	rect.	1	18
96	198.60	radiation	30.0	1440	> th	dose dependent	rect.	14	19
108	198.89	precipitation	0.1	270	< th	dose independent	rect.	15	15
109	198.89	precipitation	0.1	270	< th	dose dependent	rect.	15	15
130	198.92	radiation	30.0	1440	> th	dose dependent	rect.	14	2
170	199.31	wind	3.0	43200	> th	dose independent	rect.	3	3
171	199.33	wind	3.0	43200	< th	dose independent	rect.	3	3
175	199.38	radiation	30.0	1440	> th	dose independent	rect.	14	18
177	199.42	precipitation	0.1	270	< th	dose independent	rect.	24	8
179	199.42	precipitation	0.1	270	< th	dose dependent	rect.	24	8
191	199.62	radiation	30.0	1440	> th	dose independent	rect.	14	2
196	199.67	precipitation	0.1	30	< th	dose independent	rect.	3	17
197	199.67	precipitation	0.1	30	< th	dose dependent	rect.	3	17
203	199.72	precipitation	0.1	270	< th	dose independent	rect.	20	5
204	199.72	precipitation	0.1	270	< th	dose dependent	rect.	20	5
250	200.11	humidity	50.0	10	> th	dose dependent	rect.	20	7
258	200.21	radiation	30.0	1440	< th	dose independent	rect.	14	2
264	200.33	radiation	30.0	1440	< th	dose independent	rect.	14	14
267	200.35	humidity	70.0	14400	< th	dose independent	rect.	11	2
285	200.53	radiation	30.0	1440	< th	dose independent	rect.	14	18
286	200.54	wind	3.0	43200	< th	dose independent	rect.	4	1
290	200.57	radiation	30.0	1440	< th	dose independent	rect.	14	4
326	200.73	atmosphere	1000.0	30	> th	dose independent	rect.	20	7
331	200.77	temperature	30.0	14400	> th	dose independent	rect.	15	1
332	200.78	radiation	30.0	1440	< th	dose independent	rect.	14	8
349	200.91	humidity	70.0	270	> th	dose independent	rect.	24	8
350	200.92	humidity	70.0	14400	> th	dose independent	rect.	11	2
375	201.13	temperature	30.0	14400	< th	dose independent	rect.	14	3
407	201.21	temperature	30.0	14400	< th	dose independent	rect.	15	1
411	201.23	radiation	30.0	270	< th	dose independent	rect.	24	8
424	201.40	radiation	1.0	270	< th	dose dependent	rect.	5	21
429	201.44	wind	1.0	270	> th	dose independent	rect.	11	9
431	201.46	temperature	30.0	14400	< th	dose independent	rect.	14	13
434	201.47	temperature	30.0	14400	< th	dose independent	rect.	14	11
440	201.49	temperature	30.0	14400	< th	dose independent	rect.	14	5
448	201.51	temperature	10.0	270	> th	dose independent	rect.	24	8
449	201.51	temperature	30.0	270	< th	dose independent	rect.	24	8
450	201.51	humidity	50.0	270	> th	dose independent	rect.	24	8
452	201.51	atmosphere	995.0	270	> th	dose independent	rect.	24	8
453	201.51	atmosphere	1015.0	270	< th	dose independent	rect.	24	8
454	201.51	temperature	10.0	270	> th	dose independent	rect.	8	16
455	201.52	wind	9.0	270	< th	dose independent	rect.	24	8
458	201.55	radiation	40.0	4320	> th	dose independent	rect.	8	2
460	201.55	wind	9.0	270	< th	dose dependent	rect.	19	6
477	201.57	temperature	30.0	14400	> th	dose independent	rect.	14	5
519	201.85	temperature	30.0	14400	> th	dose dependent	rect.	15	1
531	201.96	temperature	30.0	14400	> th	dose dependent	rect.	14	5
549	202.01	wind	9.0	270	< th	dose independent	rect.	8	16
579	202.11	temperature	30.0	14400	> th	dose dependent	sin	13	NA
647	202.33	radiation	20.0	1440	> th	dose independent	rect.	16	15
672	202.40	temperature	30.0	1440	< th	dose independent	sin	11	NA
674	202.41	wind	7.0	10	< th	dose independent	rect.	20	7
683	202.44	temperature	30.0	14400	> th	dose independent	sin	14	NA
684	202.44	temperature	30.0	14400	< th	dose independent	sin	14	NA
689	202.47	radiation	40.0	4320	< th	dose independent	rect.	8	2
788	202.71	wind	7.0	43200	> th	dose independent	rect.	10	1
809	202.74	radiation	40.0	4320	< th	dose independent	rect.	21	13
813	202.75	radiation	40.0	4320	< th	dose independent	rect.	24	10
820	202.76	atmosphere	995.0	270	> th	dose independent	rect.	8	16
821	202.76	radiation	30.0	4320	> th	dose dependent	rect.	8	2
827	202.78	wind	9.0	270	< th	dose dependent	rect.	7	17
842	202.83	temperature	30.0	1440	> th	dose independent	sin	12	NA
843	202.83	wind	7.0	43200	< th	dose independent	rect.	10	1
844	202.83	temperature	10.0	10	> th	dose independent	rect.	20	7
845	202.83	temperature	30.0	10	< th	dose independent	rect.	20	7
846	202.83	humidity	50.0	10	> th	dose independent	rect.	20	7
850	202.83	radiation	1.0	10	< th	dose independent	rect.	20	7
856	202.83	temperature	10.0	10	> th	dose independent	rect.	3	17
858	202.83	atmosphere	1015.0	10	< th	dose independent	rect.	3	17
862	202.83	radiation	1.0	10	< th	dose dependent	rect.	20	7
871	202.84	radiation	30.0	1440	> th	dose dependent	sin	13	NA
886	202.85	temperature	30.0	14400	< th	dose independent	rect.	14	22
950	202.92	precipitation	0.1	10	< th	dose independent	rect.	3	6
951	202.92	radiation	20.0	4320	> th	dose independent	rect.	16	17
952	202.92	temperature	30.0	1440	> th	dose independent	rect.	15	21
954	202.92	temperature	30.0	1440	< th	dose independent	rect.	15	21
955	202.92	temperature	30.0	14400	> th	dose independent	rect.	14	22
956	202.92	precipitation	0.1	10	< th	dose dependent	rect.	3	6
961	202.94	temperature	30.0	1440	> th	dose independent	rect.	17	22
979	202.95	temperature	30.0	1440	> th	dose independent	rect.	15	23