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Os08g0545200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase superfamily, zinc-containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14 (0.0197) R2 : 0.94
β1 : 0.973 (0.0718) R2dD : 0.0242 R2D : 0.0094
β2 : 2.63 (0.0734) R2dC : 0.361 R2C : 0.734
β3 : -2.33 (0.0899) R2dE : 0.192 R2E : 0.561
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.258 (0.0422) R2dN8 : 0.00671 R2N8 : -0.0089
σ : 0.366
deviance : 61.71
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 10.98
memory length : 262
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.27
open length of G : 4.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.61 0.366 14 0.93 2.59 -2.36 -0.879 -0.456 0.249 16.4 10.72 274 1.1 4.88
60.7 0.363 14 0.961 2.63 -2.33 -0.813 -- 0.264 16.4 11.17 268 1.13 4.87
61.5 0.365 14 0.985 2.62 -2.36 -- 0.476 0.261 16.4 10.85 265 1.22 4.78
61.71 0.366 14 0.973 2.63 -2.33 -- -- 0.258 16.4 10.98 262 1.27 4.78
201.22 0.661 14 0.921 -- -3.48 -- 0.567 0.713 -- 2.192 251 0.0166 6.67
140.18 0.555 14.1 0.825 4.08 -- -0.311 -- 0.101 16.9 -- -- -- --
140.43 0.555 14.1 0.824 4.08 -- -- -- 0.0996 16.9 -- -- -- --
179.92 0.625 14 0.989 -- -3.72 -- -- 0.321 -- 0.0592 248 0.0154 6.66
85.18 0.43 14 -- 2.72 -2.25 -- -- 0.139 16.5 10.48 253 1.55 4.48
1019.93 1.49 14 0.673 -- -- -- -- -0.0059 -- -- -- -- --
158.33 0.589 14.1 -- 4.07 -- -- -- 0.00783 16.9 -- -- -- --
201.52 0.661 14 -- -- -3.92 -- -- 0.283 -- -1.231 277 0.00766 6.57
1031.86 1.5 14 -- -- -- -- -- -0.0805 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.98 temperature 10.0 270 > th dose dependent rect. 1 5
3 62.42 temperature 10.0 270 > th dose dependent rect. 2 3
7 66.99 precipitation 0.1 270 < th dose independent rect. 2 3
8 66.99 precipitation 0.1 270 < th dose dependent rect. 2 3
10 67.10 atmosphere 1015.0 270 < th dose dependent rect. 2 3
11 67.22 precipitation 0.1 270 < th dose independent rect. 1 5
12 67.22 precipitation 0.1 270 < th dose dependent rect. 1 5
15 67.39 wind 9.0 270 < th dose dependent rect. 2 3
18 67.69 wind 9.0 270 < th dose dependent rect. 1 5
19 67.87 humidity 50.0 270 > th dose dependent rect. 2 3
25 68.68 humidity 50.0 270 > th dose dependent rect. 1 5
26 68.69 radiation 10.0 270 < th dose independent rect. 1 5
27 68.94 radiation 1.0 270 < th dose independent rect. 2 3
30 68.99 radiation 10.0 270 < th dose dependent rect. 2 3
34 69.03 wind 9.0 270 < th dose independent rect. 2 3
35 69.03 temperature 10.0 270 > th dose independent rect. 2 3
37 69.03 temperature 30.0 270 < th dose independent rect. 2 3
38 69.03 humidity 50.0 270 > th dose independent rect. 2 3
41 69.03 atmosphere 995.0 270 > th dose independent rect. 2 3
42 69.03 atmosphere 1010.0 270 < th dose independent rect. 2 3
47 69.03 temperature 10.0 270 > th dose independent rect. 5 21
49 69.10 temperature 10.0 270 > th dose independent rect. 1 5
51 69.10 temperature 30.0 270 < th dose independent rect. 1 5
52 69.10 humidity 50.0 270 > th dose independent rect. 1 5
55 69.10 atmosphere 995.0 270 > th dose independent rect. 1 5
56 69.10 atmosphere 1015.0 270 < th dose independent rect. 1 5
60 69.10 temperature 10.0 270 > th dose independent rect. 6 19
61 69.11 wind 9.0 270 < th dose independent rect. 1 5
66 69.40 radiation 40.0 270 < th dose dependent rect. 1 5
69 69.49 atmosphere 1015.0 270 < th dose dependent rect. 1 5
74 69.71 wind 9.0 270 < th dose independent rect. 6 19
77 69.94 wind 9.0 270 < th dose independent rect. 5 21
90 70.88 precipitation 0.1 270 < th dose independent rect. 6 19
91 70.88 precipitation 0.1 270 < th dose dependent rect. 6 19
92 70.98 wind 3.0 270 < th dose independent rect. 2 3
95 71.05 temperature 10.0 10 > th dose dependent rect. 3 5
114 72.05 precipitation 0.1 270 < th dose independent rect. 5 21
115 72.05 precipitation 0.1 270 < th dose dependent rect. 5 21
124 72.66 wind 3.0 270 < th dose independent rect. 1 5
126 72.70 atmosphere 995.0 270 > th dose independent rect. 6 19
222 74.38 wind 7.0 10 < th dose dependent rect. 3 5
236 74.66 precipitation 0.1 270 < th dose independent rect. 1 18
237 74.66 precipitation 0.1 270 < th dose dependent rect. 1 18
264 74.89 temperature 30.0 90 < th dose dependent rect. 21 6
267 75.00 atmosphere 995.0 270 > th dose independent rect. 5 21
289 75.37 humidity 50.0 90 > th dose dependent rect. 21 6
318 75.88 radiation 1.0 270 < th dose dependent rect. 2 9
319 75.89 temperature 10.0 270 > th dose independent rect. 19 6
320 75.89 temperature 30.0 270 < th dose independent rect. 19 6
321 75.89 humidity 50.0 270 > th dose independent rect. 19 6
322 75.89 atmosphere 995.0 270 > th dose independent rect. 19 6
324 75.89 radiation 1.0 270 < th dose independent rect. 19 6
329 75.89 temperature 10.0 270 > th dose independent rect. 1 18
330 75.89 atmosphere 1015.0 270 < th dose independent rect. 1 18
331 75.89 radiation 1.0 270 < th dose dependent rect. 19 6
336 75.94 wind 9.0 270 < th dose independent rect. 19 6
341 76.02 precipitation 0.1 10 < th dose independent rect. 3 5
342 76.02 precipitation 0.1 10 < th dose dependent rect. 3 5
343 76.03 precipitation 0.1 90 < th dose independent rect. 3 18
344 76.03 precipitation 0.1 90 < th dose dependent rect. 3 18
345 76.04 wind 9.0 90 < th dose independent rect. 21 6
346 76.05 temperature 10.0 90 > th dose independent rect. 21 6
347 76.05 temperature 30.0 90 < th dose independent rect. 21 6
348 76.05 humidity 50.0 90 > th dose independent rect. 21 6
351 76.05 atmosphere 995.0 90 > th dose independent rect. 21 6
352 76.05 radiation 1.0 90 < th dose independent rect. 21 6
357 76.05 temperature 10.0 90 > th dose independent rect. 3 18
358 76.05 atmosphere 1015.0 90 < th dose independent rect. 3 18
359 76.05 humidity 50.0 270 > th dose dependent rect. 19 6
360 76.05 radiation 1.0 90 < th dose dependent rect. 21 6
375 76.26 temperature 20.0 10 > th dose independent rect. 3 5
377 76.28 wind 9.0 270 < th dose independent rect. 1 18
381 76.37 precipitation 0.1 90 < th dose independent rect. 21 6
383 76.37 precipitation 0.1 90 < th dose dependent rect. 21 6
442 76.86 precipitation 0.1 270 < th dose independent rect. 19 6
443 76.86 precipitation 0.1 270 < th dose dependent rect. 19 6
451 77.14 precipitation 0.1 270 < th dose independent rect. 24 21
453 77.14 precipitation 0.1 270 < th dose dependent rect. 24 21
479 77.21 precipitation 0.1 270 < th dose independent rect. 15 15
480 77.21 precipitation 0.1 270 < th dose dependent rect. 15 15
490 77.45 radiation 1.0 270 < th dose independent rect. 1 10
506 77.63 humidity 50.0 270 > th dose dependent rect. 21 3
515 77.72 wind 9.0 270 < th dose independent rect. 15 15
516 77.72 wind 9.0 90 < th dose independent rect. 3 18
524 77.80 temperature 15.0 270 > th dose independent rect. 6 9
539 77.89 wind 9.0 270 < th dose independent rect. 6 9
552 78.12 atmosphere 1015.0 270 < th dose independent rect. 24 21
554 78.13 radiation 1.0 270 < th dose dependent rect. 1 18
567 78.41 wind 9.0 10 < th dose independent rect. 8 19
568 78.43 temperature 10.0 270 > th dose independent rect. 21 3
569 78.43 temperature 30.0 270 < th dose independent rect. 21 3
570 78.43 humidity 50.0 270 > th dose independent rect. 21 3
573 78.43 atmosphere 995.0 270 > th dose independent rect. 21 3
574 78.43 radiation 1.0 270 < th dose independent rect. 21 3
579 78.43 temperature 10.0 270 > th dose independent rect. 24 21
580 78.43 radiation 1.0 270 < th dose dependent rect. 21 3
585 78.47 precipitation 0.1 270 < th dose independent rect. 6 9
586 78.47 precipitation 0.1 270 < th dose dependent rect. 6 9
587 78.48 wind 9.0 270 < th dose independent rect. 21 3
593 78.54 radiation 40.0 270 < th dose independent rect. 15 15
595 78.56 atmosphere 995.0 270 > th dose independent rect. 6 9
600 78.61 temperature 30.0 270 < th dose dependent rect. 21 4
603 78.66 wind 9.0 10 < th dose independent rect. 3 5
604 78.66 temperature 10.0 10 > th dose independent rect. 3 5
606 78.66 temperature 30.0 10 < th dose independent rect. 3 5
607 78.66 humidity 50.0 10 > th dose independent rect. 3 5
609 78.66 atmosphere 995.0 10 > th dose independent rect. 3 5
610 78.66 atmosphere 1015.0 10 < th dose independent rect. 3 5
611 78.66 temperature 10.0 10 > th dose independent rect. 8 19
614 78.67 atmosphere 1015.0 270 < th dose independent rect. 6 9
615 78.67 temperature 10.0 270 > th dose independent rect. 15 15
644 78.79 wind 1.0 270 > th dose independent rect. 6 19
647 78.87 radiation 40.0 10 < th dose independent rect. 3 5
656 78.95 precipitation 0.1 270 < th dose independent rect. 21 3
657 78.95 precipitation 0.1 270 < th dose dependent rect. 21 3
684 79.12 wind 9.0 270 < th dose independent rect. 24 21
699 79.26 precipitation 0.1 10 < th dose independent rect. 8 19
700 79.26 precipitation 0.1 10 < th dose dependent rect. 8 19
713 79.53 atmosphere 1015.0 270 < th dose independent rect. 11 10
738 79.71 radiation 1.0 270 < th dose independent rect. 1 18
795 80.13 wind 7.0 270 < th dose independent rect. 21 14
798 80.18 wind 9.0 90 < th dose dependent rect. 21 6
803 80.25 atmosphere 1015.0 10 < th dose dependent rect. 3 5
827 80.71 wind 9.0 270 < th dose dependent rect. 19 6
828 80.72 temperature 10.0 270 > th dose independent rect. 11 10
829 80.72 temperature 10.0 270 > th dose independent rect. 21 14
830 80.72 atmosphere 995.0 270 > th dose independent rect. 21 14
836 80.80 humidity 50.0 270 > th dose independent rect. 21 14
852 80.98 wind 9.0 270 < th dose dependent rect. 21 3
860 81.15 atmosphere 995.0 10 > th dose independent rect. 8 19
866 81.24 atmosphere 995.0 90 > th dose dependent rect. 21 6
887 81.44 wind 9.0 270 < th dose independent rect. 11 10
916 81.57 atmosphere 995.0 270 > th dose independent rect. 1 18
940 81.69 wind 1.0 270 > th dose independent rect. 5 21
944 81.75 temperature 10.0 270 > th dose dependent rect. 15 15
951 81.83 temperature 30.0 10 < th dose dependent rect. 21 7
953 81.85 atmosphere 995.0 90 > th dose independent rect. 3 18