Os08g0544600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0544600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.71 | 0.667 | 4.78 | -1.25 | 0.697 | -1.64 | 2.08 | 1.59 | -0.865 | 20 | 19.54 | 145 | -- | -- |
| 205.1 | 0.667 | 4.78 | -1.24 | 0.482 | -1.8 | 2.64 | -- | -0.872 | 21.8 | 19.16 | 187 | -- | -- |
| 211.95 | 0.678 | 4.78 | -1.3 | 0.718 | -1.69 | -- | 2.28 | -0.859 | 20.3 | 17.87 | 146 | -- | -- |
| 236.25 | 0.716 | 4.78 | -1.33 | 0.56 | -1.65 | -- | -- | -0.86 | 20.1 | 20 | 177 | -- | -- |
| 228.09 | 0.703 | 4.76 | -1.31 | -- | -1.63 | -- | 2.22 | -0.869 | -- | 20 | 212 | -- | -- |
| 266.6 | 0.765 | 4.73 | -1.19 | 1.62 | -- | -1.55 | -- | -0.755 | 14.5 | -- | -- | -- | -- |
| 274.23 | 0.775 | 4.74 | -1.23 | 1.63 | -- | -- | -- | -0.763 | 14.8 | -- | -- | -- | -- |
| 245.29 | 0.729 | 4.76 | -1.33 | -- | -1.67 | -- | -- | -0.874 | -- | 20 | 261 | -- | -- |
| 278.72 | 0.778 | 4.74 | -- | 0.645 | -1.57 | -- | -- | -0.684 | 20.5 | 10.17 | 189 | -- | -- |
| 429.05 | 0.968 | 4.75 | -1.3 | -- | -- | -- | -- | -0.804 | -- | -- | -- | -- | -- |
| 314.12 | 0.829 | 4.71 | -- | 1.66 | -- | -- | -- | -0.626 | 14.8 | -- | -- | -- | -- |
| 289.1 | 0.792 | 4.72 | -- | -- | -1.56 | -- | -- | -0.682 | -- | 10 | 322 | -- | -- |
| 473.62 | 1.02 | 4.72 | -- | -- | -- | -- | -- | -0.66 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 3 | 189.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 4 | 190.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 73 | 199.15 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 15 |
| 110 | 201.30 | radiation | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 121 | 201.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 129 | 202.26 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 145 | 202.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 148 | 202.90 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 20 |
| 154 | 203.04 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 198 | 204.47 | humidity | 60 | 270 | > th | dose independent | rect. | 15 | 15 |
| 217 | 205.12 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 254 | 206.22 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 284 | 207.13 | radiation | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 292 | 207.20 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 17 |
| 309 | 207.46 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 314 | 207.53 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 15 |
| 318 | 207.62 | radiation | 10 | 270 | < th | dose independent | rect. | 22 | 23 |
| 385 | 208.93 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 23 |
| 407 | 209.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 433 | 209.65 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 442 | 209.71 | humidity | 70 | 10 | > th | dose independent | rect. | 16 | 16 |
| 448 | 209.81 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 23 |
| 457 | 209.94 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 461 | 210.00 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 481 | 210.22 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 548 | 210.89 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 568 | 211.12 | humidity | 60 | 270 | > th | dose independent | rect. | 2 | 17 |
| 626 | 211.78 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 630 | 211.80 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 16 |
| 636 | 211.85 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 643 | 211.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 654 | 212.10 | temperature | 20 | 10 | > th | dose dependent | sin | 17 | NA |
| 670 | 212.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 767 | 213.03 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 9 |
| 777 | 213.11 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 20 |
| 783 | 213.13 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 834 | 213.55 | radiation | 30 | 270 | < th | dose independent | rect. | 1 | 14 |
| 911 | 214.12 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 947 | 214.35 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 10 |