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Os08g0544500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ARP2/3 regulatory protein subunit NAPP.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0168) R2 : 0.0391
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.152 (0.0354) R2dN8 : 0.0505 R2N8 : 0.0391
σ : 0.316
deviance : 45.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.78 0.214 10.4 0.889 0.334 0.108 -0.136 1.99 0.282 23.8 28.88 1051 -- --
20.94 0.213 10.5 0.562 0.331 0.323 -0.107 -- 0.273 23.9 29.7 1051 -- --
20.85 0.213 10.4 0.897 0.335 0.0998 -- 2.05 0.281 23.9 29.06 1040 -- --
20.98 0.213 10.5 0.568 0.334 0.323 -- -- 0.272 23.9 29.74 1040 -- --
27.26 0.243 10.5 0.659 -- 0.369 -- 0.632 0.248 -- 26.3 1006 -- --
25.18 0.235 10.5 0.643 0.387 -- -0.0209 -- 0.22 23.9 -- -- -- --
25.18 0.235 10.5 0.644 0.387 -- -- -- 0.22 23.9 -- -- -- --
27.21 0.243 10.5 0.527 -- 0.487 -- -- 0.191 -- 25.43 975 -- --
29.27 0.252 10.5 -- 0.323 0.408 -- -- 0.252 23.9 29.85 1095 -- --
34.59 0.275 10.5 0.655 -- -- -- -- 0.225 -- -- -- -- --
36.1 0.281 10.5 -- 0.395 -- -- -- 0.148 24 -- -- -- --
33.99 0.272 10.5 -- -- 0.603 -- -- 0.0981 -- 24.32 988 -- --
45.91 0.316 10.5 -- -- -- -- -- 0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.27 temperature 30 720 < th dose independent rect. 15 6
4 20.44 temperature 25 720 > th dose dependent rect. 17 2
6 20.49 humidity 70 720 > th dose independent rect. 17 4
12 20.60 humidity 70 720 > th dose independent rect. 17 10
15 20.65 humidity 70 720 < th dose independent rect. 16 17
16 20.66 humidity 70 720 > th dose independent rect. 16 7
21 20.69 humidity 70 720 < th dose independent rect. 16 4
27 20.69 temperature 30 720 < th dose independent rect. 17 10
33 20.70 temperature 30 720 > th dose independent rect. 16 3
46 20.70 temperature 30 720 < th dose independent rect. 16 15
49 20.71 humidity 70 720 > th dose independent rect. 16 13
50 20.72 temperature 30 720 > th dose independent sin 12 NA
54 20.72 humidity 70 720 > th dose independent rect. 16 15
56 20.75 temperature 30 720 < th dose independent rect. 17 1
83 20.80 humidity 70 720 > th dose independent rect. 16 18
104 20.90 temperature 30 720 < th dose independent sin 12 NA
118 20.97 humidity 70 720 > th dose independent sin 12 NA
119 20.97 humidity 70 720 < th dose independent sin 12 NA
154 21.06 humidity 80 720 < th dose dependent rect. 16 5
187 21.14 humidity 60 14400 < th dose independent rect. 17 16
213 21.20 temperature 25 720 > th dose dependent rect. 16 16
217 21.22 humidity 60 14400 < th dose independent rect. 17 1
235 21.26 humidity 80 720 < th dose dependent rect. 16 17
243 21.28 temperature 30 720 < th dose independent sin 18 NA
247 21.28 humidity 70 720 < th dose dependent sin 11 NA
255 21.30 radiation 10 270 < th dose dependent rect. 8 17
281 21.33 humidity 50 14400 > th dose independent rect. 16 19
327 21.37 humidity 60 14400 > th dose independent rect. 17 16
355 21.42 humidity 90 270 < th dose dependent rect. 12 10
358 21.43 radiation 10 270 > th dose independent sin 14 NA
370 21.44 radiation 10 270 < th dose dependent sin 17 NA
379 21.45 wind 1 1440 < th dose independent rect. 4 2
385 21.45 radiation 20 270 < th dose dependent sin 15 NA
400 21.47 humidity 70 90 > th dose independent rect. 17 10
402 21.47 temperature 25 720 > th dose dependent sin 14 NA
412 21.48 humidity 60 14400 > th dose independent rect. 17 1
427 21.48 humidity 80 720 < th dose dependent sin 15 NA
447 21.49 temperature 30 720 < th dose independent rect. 11 15
451 21.50 temperature 30 720 < th dose independent rect. 11 9
484 21.53 humidity 50 4320 > th dose independent rect. 15 1
493 21.53 radiation 10 270 < th dose dependent rect. 5 22
512 21.55 humidity 60 14400 > th dose independent rect. 17 7
525 21.56 humidity 60 14400 > th dose independent rect. 17 5
554 21.57 radiation 1 270 > th dose dependent sin 14 NA
567 21.58 humidity 50 720 > th dose dependent rect. 15 6
597 21.59 humidity 50 270 > th dose dependent rect. 8 15
602 21.60 radiation 10 270 < th dose independent sin 15 NA
620 21.61 humidity 60 720 > th dose dependent rect. 17 2
622 21.61 humidity 60 14400 < th dose dependent rect. 17 17
628 21.62 radiation 20 270 < th dose dependent rect. 11 14
632 21.63 temperature 30 90 < th dose independent rect. 17 10
637 21.63 temperature 10 720 > th dose dependent rect. 12 7
638 21.63 temperature 15 270 > th dose dependent rect. 12 17
640 21.64 humidity 50 14400 < th dose independent sin 11 NA
644 21.64 radiation 10 270 < th dose independent rect. 9 16
666 21.66 humidity 50 14400 < th dose independent rect. 16 20
719 21.69 temperature 30 720 < th dose independent rect. 5 22
778 21.71 radiation 10 270 > th dose independent rect. 12 20
851 21.73 temperature 30 720 < th dose dependent rect. 17 2
872 21.74 temperature 30 720 < th dose independent rect. 24 21
880 21.74 temperature 20 270 > th dose dependent rect. 12 7
884 21.74 temperature 10 720 > th dose dependent rect. 12 10
887 21.74 temperature 10 720 > th dose dependent rect. 12 12
952 21.76 radiation 10 270 < th dose independent rect. 13 12
989 21.77 wind 1 1440 > th dose independent rect. 4 2