Os08g0544400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tobacco mosaic virus coat protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0544400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tobacco mosaic virus coat protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 426.01 | 0.97 | 2.85 | 1.28 | 0.595 | 1.09 | -1.53 | -6.64 | 0.203 | 22.6 | 29.99 | 1401 | -- | -- |
| 430.13 | 0.966 | 2.97 | 0.233 | 0.501 | 0.796 | -1.63 | -- | 0.361 | 22 | 19.8 | 4496 | -- | -- |
| 435.25 | 0.972 | 2.87 | 1.23 | 0.611 | 1.08 | -- | -6.28 | 0.197 | 23.2 | 29.92 | 1344 | -- | -- |
| 438.15 | 0.975 | 2.97 | 0.245 | 0.556 | 0.764 | -- | -- | 0.35 | 23.2 | 19.99 | 4485 | -- | -- |
| 457.28 | 0.996 | 2.86 | 1.12 | -- | 1.06 | -- | -6.21 | 0.197 | -- | 29.95 | 1509 | -- | -- |
| 438.67 | 0.982 | 3.02 | -0.28 | 0.551 | -- | -1.54 | -- | 0.146 | 22.5 | -- | -- | -- | -- |
| 448.02 | 0.991 | 3.02 | -0.221 | 0.56 | -- | -- | -- | 0.148 | 23.1 | -- | -- | -- | -- |
| 457.84 | 0.997 | 2.97 | 0.269 | -- | 0.772 | -- | -- | 0.364 | -- | 19.9 | 4507 | -- | -- |
| 439.33 | 0.976 | 2.97 | -- | 0.584 | 0.666 | -- | -- | 0.308 | 23.1 | 19.8 | 4491 | -- | -- |
| 467.54 | 1.01 | 3 | -0.208 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 449.3 | 0.992 | 3.01 | -- | 0.557 | -- | -- | -- | 0.172 | 23.1 | -- | -- | -- | -- |
| 458.92 | 0.998 | 2.97 | -- | -- | 0.609 | -- | -- | 0.297 | -- | 19.8 | 4495 | -- | -- |
| 468.68 | 1.01 | 3 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 413.14 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 6 | 413.14 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 19 | 413.67 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 22 | 415.40 | wind | 3.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 23 | 416.14 | temperature | 20.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 25 | 416.31 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 29 | 417.12 | wind | 5.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 30 | 417.13 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 34 | 417.67 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 43 | 418.68 | temperature | 20.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 44 | 418.69 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 5 |
| 45 | 418.70 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 48 | 418.78 | wind | 9.0 | 270 | > th | dose dependent | rect. | 18 | 3 |
| 52 | 418.90 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 61 | 419.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 72 | 419.44 | wind | 7.0 | 270 | > th | dose independent | rect. | 19 | 3 |
| 86 | 419.71 | humidity | 80.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 88 | 419.75 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 89 | 419.77 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 90 | 419.80 | wind | 7.0 | 90 | > th | dose dependent | rect. | 18 | 7 |
| 114 | 420.44 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 117 | 420.48 | wind | 7.0 | 90 | > th | dose dependent | rect. | 18 | 14 |
| 119 | 420.50 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 123 | 420.52 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 169 | 420.90 | wind | 9.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 170 | 420.90 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 172 | 420.92 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 175 | 420.96 | radiation | 10.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 179 | 421.05 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 182 | 421.10 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 194 | 421.24 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 199 | 421.29 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 16 |
| 213 | 421.39 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 214 | 421.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 217 | 421.42 | humidity | 90.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 219 | 421.44 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 234 | 421.51 | wind | 1.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 235 | 421.51 | temperature | 10.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 237 | 421.51 | humidity | 50.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 238 | 421.51 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 243 | 421.51 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 18 | 1 |
| 244 | 421.51 | temperature | 10.0 | 10 | > th | dose independent | rect. | 19 | 23 |
| 245 | 421.51 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 264 | 421.59 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 313 | 421.78 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 367 | 421.89 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 380 | 421.93 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 388 | 421.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 389 | 421.98 | atmosphere | 995.0 | 720 | < th | dose independent | rect. | 14 | 1 |
| 430 | 421.98 | atmosphere | 995.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 486 | 422.03 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 493 | 422.03 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 516 | 422.09 | temperature | 20.0 | 30 | > th | dose independent | rect. | 24 | 18 |
| 561 | 422.27 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 19 | 23 |
| 589 | 422.35 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 613 | 422.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 647 | 422.54 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 651 | 422.56 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 660 | 422.61 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 696 | 422.73 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 5 | NA |
| 697 | 422.73 | temperature | 25.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 705 | 422.76 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 721 | 422.84 | temperature | 20.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 736 | 422.92 | wind | 3.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 738 | 422.92 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 11 |
| 751 | 422.98 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 780 | 423.10 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 798 | 423.25 | atmosphere | 995.0 | 720 | < th | dose independent | sin | 6 | NA |
| 819 | 423.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 828 | 423.30 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 832 | 423.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 853 | 423.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 856 | 423.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 899 | 423.46 | radiation | 10.0 | 10 | < th | dose independent | rect. | 11 | 2 |
| 963 | 423.74 | wind | 1.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 968 | 423.78 | temperature | 20.0 | 10 | < th | dose independent | rect. | 2 | 17 |
| 970 | 423.79 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 977 | 423.85 | wind | 1.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 996 | 423.93 | temperature | 25.0 | 10 | < th | dose dependent | sin | 5 | NA |