Os08g0543500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os08g0543500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.66 | 0.505 | 6.63 | 0.0528 | 1.32 | 1.26 | -1.46 | 1.41 | 0.371 | 5.42 | 59.95 | 99 | -- | -- |
| 120.09 | 0.51 | 6.63 | 0.108 | 1.3 | 1.33 | -0.862 | -- | 0.38 | 5.49 | 59 | 105 | -- | -- |
| 120.15 | 0.511 | 6.62 | 0.0992 | 1.29 | 1.31 | -- | 0.919 | 0.404 | 5.43 | 60.13 | 105 | -- | -- |
| 121.78 | 0.514 | 6.63 | 0.0966 | 1.32 | 1.28 | -- | -- | 0.379 | 5.39 | 59.49 | 106 | -- | -- |
| 156.41 | 0.582 | 6.63 | 0.0468 | -- | 2.26 | -- | 0.262 | 0.5 | -- | 64.52 | 251 | -- | -- |
| 152.36 | 0.579 | 6.64 | 0.0977 | 2.12 | -- | -0.206 | -- | 0.33 | 4.52 | -- | -- | -- | -- |
| 152.47 | 0.578 | 6.64 | 0.0991 | 2.12 | -- | -- | -- | 0.331 | 4.51 | -- | -- | -- | -- |
| 156.53 | 0.583 | 6.63 | 0.0893 | -- | 2.26 | -- | -- | 0.503 | -- | 64.61 | 251 | -- | -- |
| 122.04 | 0.515 | 6.63 | -- | 1.32 | 1.28 | -- | -- | 0.371 | 5.39 | 59.73 | 106 | -- | -- |
| 392.44 | 0.926 | 6.65 | 0.181 | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
| 152.73 | 0.578 | 6.64 | -- | 2.12 | -- | -- | -- | 0.32 | 4.51 | -- | -- | -- | -- |
| 156.73 | 0.583 | 6.63 | -- | -- | 2.26 | -- | -- | 0.494 | -- | 64.8 | 249 | -- | -- |
| 393.3 | 0.926 | 6.66 | -- | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.37 | humidity | 60 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 3 | 115.02 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 4 | 115.37 | humidity | 60 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 5 | 115.43 | humidity | 60 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 6 | 115.69 | humidity | 60 | 90 | > th | dose dependent | no | NA | NA |
| 7 | 116.08 | humidity | 60 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 11 | 116.87 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 23 | 118.10 | humidity | 60 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 51 | 119.72 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 59 | 119.79 | humidity | 90 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 60 | 119.80 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 23 |
| 62 | 119.81 | humidity | 90 | 90 | < th | dose dependent | no | NA | NA |
| 66 | 119.93 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 70 | 120.03 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 76 | 120.14 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 84 | 120.36 | humidity | 60 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 85 | 120.39 | humidity | 60 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 97 | 120.58 | humidity | 70 | 90 | > th | dose dependent | sin | 21 | NA |
| 105 | 120.66 | humidity | 80 | 90 | > th | dose independent | rect. | 1 | 23 |
| 110 | 120.80 | humidity | 90 | 90 | < th | dose dependent | rect. | 14 | 23 |
| 133 | 121.09 | humidity | 80 | 90 | < th | dose independent | rect. | 22 | 23 |
| 136 | 121.14 | humidity | 80 | 90 | > th | dose independent | rect. | 15 | 23 |
| 145 | 121.24 | humidity | 80 | 90 | > th | dose independent | rect. | 17 | 23 |
| 152 | 121.35 | humidity | 80 | 90 | > th | dose independent | no | NA | NA |
| 153 | 121.36 | humidity | 80 | 90 | > th | dose independent | rect. | 13 | 23 |
| 158 | 121.41 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 22 |
| 183 | 121.65 | humidity | 80 | 90 | > th | dose independent | rect. | 21 | 23 |
| 199 | 121.83 | humidity | 80 | 90 | > th | dose independent | rect. | 9 | 23 |
| 212 | 121.96 | humidity | 80 | 90 | < th | dose independent | no | NA | NA |
| 220 | 122.01 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 23 |
| 226 | 122.05 | humidity | 80 | 90 | < th | dose independent | rect. | 3 | 23 |
| 246 | 122.19 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 283 | 122.43 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 285 | 122.44 | humidity | 80 | 90 | < th | dose independent | rect. | 19 | 23 |
| 299 | 122.57 | humidity | 80 | 90 | < th | dose independent | rect. | 11 | 23 |
| 322 | 122.74 | humidity | 80 | 90 | > th | dose independent | rect. | 7 | 23 |
| 367 | 123.05 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 14 |
| 383 | 123.16 | humidity | 80 | 90 | < th | dose independent | rect. | 15 | 23 |
| 384 | 123.18 | humidity | 80 | 90 | < th | dose independent | sin | 21 | NA |
| 407 | 123.29 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 16 |
| 417 | 123.34 | humidity | 70 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 423 | 123.36 | humidity | 80 | 90 | > th | dose independent | sin | 21 | NA |
| 425 | 123.38 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 475 | 123.67 | humidity | 80 | 270 | > th | dose independent | rect. | 9 | 12 |
| 598 | 124.19 | humidity | 80 | 90 | < th | dose independent | rect. | 13 | 23 |
| 957 | 125.33 | humidity | 90 | 90 | < th | dose dependent | sin | 21 | NA |