Os08g0543100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR type resistance protein (Fragment).
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Os08g0543100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR type resistance protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.33 | 0.551 | 6.59 | 1.71 | 0.495 | 1.24 | -0.657 | 0.793 | 0.329 | 11.4 | 21.48 | 3567 | -- | -- |
| 138.22 | 0.548 | 6.61 | 1.57 | 0.448 | 1.13 | -0.742 | -- | 0.306 | 11.4 | 21.6 | 3056 | -- | -- |
| 139.11 | 0.549 | 6.58 | 1.71 | 0.49 | 1.24 | -- | 0.905 | 0.333 | 11.5 | 21.5 | 3567 | -- | -- |
| 140.23 | 0.552 | 6.62 | 1.54 | 0.461 | 1.11 | -- | -- | 0.289 | 11.9 | 21.74 | 3029 | -- | -- |
| 152.54 | 0.575 | 6.59 | 1.75 | -- | 1.2 | -- | 0.919 | 0.347 | -- | 21.45 | 3079 | -- | -- |
| 173.06 | 0.617 | 6.53 | 2.17 | 0.429 | -- | -0.713 | -- | 0.664 | 11.2 | -- | -- | -- | -- |
| 175.03 | 0.62 | 6.54 | 2.14 | 0.435 | -- | -- | -- | 0.663 | 11.7 | -- | -- | -- | -- |
| 153.77 | 0.578 | 6.63 | 1.55 | -- | 1.08 | -- | -- | 0.292 | -- | 21.72 | 3045 | -- | -- |
| 156.64 | 0.583 | 6.69 | -- | 0.468 | 1.91 | -- | -- | -0.03 | 12.5 | 18.5 | 46033 | -- | -- |
| 186.93 | 0.639 | 6.55 | 2.13 | -- | -- | -- | -- | 0.658 | -- | -- | -- | -- | -- |
| 295.86 | 0.805 | 6.59 | -- | 0.411 | -- | -- | -- | 0.425 | 11.4 | -- | -- | -- | -- |
| 169.44 | 0.606 | 6.69 | -- | -- | 1.86 | -- | -- | -0.0231 | -- | 18.46 | 46160 | -- | -- |
| 306.45 | 0.817 | 6.6 | -- | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 2 | 137.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 4 | 137.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 7 | 137.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 9 | 137.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 14 | 137.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 24 | 137.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 29 | 137.94 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 138 | 138.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 196 | 138.69 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 288 | 138.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 635 | 139.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 690 | 139.88 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 722 | 139.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 741 | 139.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 763 | 140.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 905 | 140.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 967 | 140.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |