Os08g0542800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0542800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68 | 0.387 | 3.01 | -0.563 | 0.0654 | -1.62 | 0.0577 | 7.9 | 0.0881 | 11.3 | 999.6 | 256 | -- | -- |
| 68.94 | 0.39 | 2.93 | -0.0911 | 0.057 | -0.185 | 0.00509 | -- | 0.0866 | 10.5 | 999.6 | 256 | -- | -- |
| 68.01 | 0.384 | 3.01 | -0.56 | 0.0659 | -1.62 | -- | 7.89 | 0.088 | 10.8 | 999.6 | 255 | -- | -- |
| 68.78 | 0.386 | 2.93 | -0.0992 | 0.0541 | -0.211 | -- | -- | 0.0868 | 10.6 | 999.6 | 236 | -- | -- |
| 68.28 | 0.385 | 3.01 | -0.547 | -- | -1.58 | -- | 7.64 | 0.0877 | -- | 999.6 | 255 | -- | -- |
| 69.85 | 0.392 | 2.93 | -0.0599 | 0.0611 | -- | 0.0352 | -- | 0.0747 | 11 | -- | -- | -- | -- |
| 69.86 | 0.391 | 2.93 | -0.0587 | 0.0614 | -- | -- | -- | 0.0747 | 10.7 | -- | -- | -- | -- |
| 69 | 0.387 | 2.93 | -0.0946 | -- | -0.215 | -- | -- | 0.0872 | -- | 999.6 | 237 | -- | -- |
| 68.99 | 0.387 | 2.93 | -- | 0.0623 | -0.202 | -- | -- | 0.0967 | 10.6 | 999.6 | 247 | -- | -- |
| 70.09 | 0.391 | 2.93 | -0.0598 | -- | -- | -- | -- | 0.0743 | -- | -- | -- | -- | -- |
| 69.95 | 0.391 | 2.93 | -- | 0.0619 | -- | -- | -- | 0.0812 | 10.7 | -- | -- | -- | -- |
| 69.23 | 0.388 | 2.93 | -- | -- | -0.201 | -- | -- | 0.0965 | -- | 999.6 | 237 | -- | -- |
| 70.19 | 0.391 | 2.93 | -- | -- | -- | -- | -- | 0.081 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.34 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 18 | 1 |
| 3 | 52.34 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 2 |
| 13 | 52.34 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 15 | 52.34 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 2 |
| 74 | 62.28 | temperature | 30 | 90 | > th | dose independent | rect. | 16 | 1 |
| 77 | 62.49 | wind | 7 | 270 | > th | dose independent | rect. | 14 | 1 |
| 93 | 64.46 | wind | 7 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 165 | 65.70 | humidity | 70 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 170 | 65.89 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 16 | 10 |
| 191 | 66.21 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 9 |
| 202 | 66.24 | atmosphere | 1000 | 270 | < th | dose independent | sin | 20 | NA |
| 211 | 66.31 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 13 | 12 |
| 234 | 66.48 | atmosphere | 1000 | 270 | > th | dose independent | sin | 20 | NA |
| 252 | 66.54 | radiation | 40 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 261 | 66.57 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 296 | 66.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 2 |
| 300 | 66.68 | radiation | 30 | 30 | > th | dose dependent | rect. | 14 | 21 |
| 305 | 66.69 | radiation | 20 | 30 | > th | dose dependent | rect. | 9 | 2 |
| 306 | 66.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 307 | 66.70 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 11 |
| 314 | 66.71 | wind | 1 | 30 | < th | dose independent | rect. | 7 | 9 |
| 316 | 66.71 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 342 | 66.75 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 2 |
| 385 | 66.78 | wind | 1 | 30 | < th | dose dependent | rect. | 7 | 5 |
| 402 | 66.78 | humidity | 70 | 30 | < th | dose dependent | rect. | 16 | 19 |
| 422 | 66.81 | humidity | 70 | 10 | < th | dose independent | rect. | 10 | 1 |
| 447 | 66.82 | wind | 1 | 30 | < th | dose independent | rect. | 9 | 3 |
| 450 | 66.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 504 | 66.84 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 1 |
| 513 | 66.84 | humidity | 80 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 522 | 66.85 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 1 |
| 533 | 66.85 | humidity | 80 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 550 | 66.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 565 | 66.89 | wind | 7 | 270 | > th | dose independent | rect. | 14 | 20 |
| 684 | 66.97 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 5 |
| 692 | 66.97 | humidity | 80 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 710 | 66.99 | humidity | 60 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 867 | 67.04 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 869 | 67.04 | humidity | 60 | 90 | < th | dose independent | rect. | 17 | 17 |