Os08g0542200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance gene analog PIC25 (Fragment).
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Os08g0542200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance gene analog PIC25 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.36 | 0.502 | 5.6 | 1.76 | 1.01 | -1.35 | -0.633 | 4.32 | 0.576 | 4.63 | 24.8 | 1175 | -- | -- |
| 117.56 | 0.505 | 5.7 | 0.963 | 1.04 | -0.945 | -0.438 | -- | 0.55 | 4.85 | 22.4 | 11137 | -- | -- |
| 115.15 | 0.5 | 5.61 | 1.73 | 0.987 | -1.4 | -- | 4.33 | 0.577 | 4.33 | 24.7 | 1102 | -- | -- |
| 114.28 | 0.498 | 5.62 | 1.22 | 0.965 | -1.17 | -- | -- | 0.801 | 5.18 | 22.3 | 17266 | -- | -- |
| 149.25 | 0.569 | 5.62 | 1.82 | -- | -1.52 | -- | 4.39 | 0.576 | -- | 25.24 | 1920 | -- | -- |
| 147.93 | 0.57 | 5.76 | 0.432 | 0.93 | -- | -0.799 | -- | 0.195 | 5.42 | -- | -- | -- | -- |
| 149.48 | 0.573 | 5.75 | 0.429 | 0.925 | -- | -- | -- | 0.198 | 5.33 | -- | -- | -- | -- |
| 151.32 | 0.575 | 5.72 | 0.701 | -- | -1.32 | -- | -- | 0.416 | -- | 22.3 | 17266 | -- | -- |
| 135.62 | 0.542 | 5.68 | -- | 0.952 | -0.703 | -- | -- | 0.519 | 5.14 | 29.1 | 16559 | -- | -- |
| 194.1 | 0.651 | 5.77 | 0.461 | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
| 154.34 | 0.581 | 5.77 | -- | 0.932 | -- | -- | -- | 0.15 | 5.31 | -- | -- | -- | -- |
| 163.84 | 0.598 | 5.74 | -- | -- | -1.18 | -- | -- | 0.322 | -- | 22.3 | 17266 | -- | -- |
| 199.7 | 0.66 | 5.78 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.86 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 3 | 111.96 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 6 | 112.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 27 | 112.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 55 | 112.56 | temperature | 25 | 14400 | > th | dose dependent | sin | 6 | NA |
| 75 | 112.68 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 79 | 112.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 82 | 112.70 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 90 | 112.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 94 | 112.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 118 | 112.86 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 134 | 112.92 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 140 | 112.94 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 144 | 112.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 245 | 113.06 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 255 | 113.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 272 | 113.08 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 310 | 113.16 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 366 | 113.31 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 375 | 113.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 398 | 113.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 402 | 113.40 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 433 | 113.47 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 475 | 113.55 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 503 | 113.62 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 510 | 113.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 534 | 113.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 546 | 113.70 | humidity | 80 | 43200 | > th | dose dependent | sin | 16 | NA |
| 551 | 113.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 570 | 113.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 610 | 113.82 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 20 |
| 631 | 113.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 641 | 113.89 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 647 | 113.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 671 | 113.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 681 | 113.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 699 | 113.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 734 | 114.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 758 | 114.07 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 805 | 114.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 808 | 114.13 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 848 | 114.19 | temperature | 25 | 14400 | > th | dose independent | sin | 10 | NA |
| 859 | 114.20 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 893 | 114.23 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 911 | 114.26 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 927 | 114.28 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 1 |