Os08g0541300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os08g0541300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.64 | 0.65 | 4.85 | 1.6 | 0.27 | -3.14 | 0.501 | -4.92 | 1.04 | 19.2 | 20 | 5024 | -- | -- |
| 204.42 | 0.666 | 5.07 | 1.24 | 0.27 | -1.78 | 0.842 | -- | 0.779 | 20.1 | 22.01 | 5190 | -- | -- |
| 192.02 | 0.645 | 4.85 | 1.6 | 0.283 | -3.16 | -- | -4.97 | 1.04 | 18.3 | 19.93 | 5024 | -- | -- |
| 204.93 | 0.667 | 5.07 | 1.23 | 0.303 | -1.79 | -- | -- | 0.775 | 18.2 | 22.07 | 5194 | -- | -- |
| 196.18 | 0.652 | 4.84 | 1.59 | -- | -3.17 | -- | -4.99 | 1.03 | -- | 19.97 | 5023 | -- | -- |
| 288.92 | 0.797 | 4.92 | 2.31 | 0.294 | -- | 0.858 | -- | 1.46 | 20.3 | -- | -- | -- | -- |
| 290.82 | 0.799 | 4.92 | 2.29 | 0.311 | -- | -- | -- | 1.46 | 19.3 | -- | -- | -- | -- |
| 209.82 | 0.675 | 5.06 | 1.22 | -- | -1.79 | -- | -- | 0.774 | -- | 22.05 | 5140 | -- | -- |
| 232.41 | 0.71 | 5.08 | -- | 0.246 | -2.25 | -- | -- | 0.51 | 16.5 | 21.8 | 6601 | -- | -- |
| 295.95 | 0.804 | 4.91 | 2.28 | -- | -- | -- | -- | 1.46 | -- | -- | -- | -- | -- |
| 428.75 | 0.969 | 4.97 | -- | 0.291 | -- | -- | -- | 1.21 | 19.8 | -- | -- | -- | -- |
| 200.97 | 0.66 | 5.15 | -- | -- | -2.24 | -- | -- | 0.368 | -- | 22.99 | 39189 | -- | -- |
| 433.35 | 0.972 | 4.97 | -- | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.85 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 16 | 175.45 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 8 |
| 24 | 175.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 53 | 175.72 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 20 | NA |
| 61 | 175.74 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 62 | 175.74 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 69 | 175.75 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 15 |
| 70 | 175.75 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 91 | 175.79 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 111 | 175.83 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 112 | 175.84 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 130 | 175.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 138 | 175.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 7 |
| 144 | 175.87 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 217 | 175.93 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 229 | 175.93 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 243 | 175.94 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 255 | 175.95 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 324 | 176.06 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 349 | 176.11 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 366 | 176.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 369 | 176.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 371 | 176.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 553 | 176.67 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 595 | 177.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 619 | 177.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 632 | 177.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 663 | 177.82 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 674 | 178.22 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 711 | 178.48 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 14 | NA |
| 727 | 178.56 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 756 | 178.67 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 761 | 178.69 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 762 | 178.69 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 6 |
| 816 | 178.90 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 838 | 178.96 | radiation | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 839 | 178.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 844 | 178.97 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 13 | NA |
| 945 | 179.23 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 20 | 1 |