Os08g0540900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0540900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 348.42 | 0.877 | 5.65 | 2.01 | 1.1 | -1.95 | 0.899 | -2.67 | 0.977 | 15.9 | 20.04 | 9 | -- | -- |
| 353.61 | 0.876 | 5.6 | 2.44 | 1.09 | -2.02 | 0.0985 | -- | 1.1 | 15.8 | 20.2 | 7 | -- | -- |
| 350.1 | 0.871 | 5.63 | 2.14 | 1.09 | -1.96 | -- | -1.88 | 1.01 | 15.8 | 20.2 | 7 | -- | -- |
| 353.56 | 0.876 | 5.6 | 2.47 | 1.11 | -2.08 | -- | -- | 1.11 | 15.8 | 20.2 | 7 | -- | -- |
| 395.57 | 0.926 | 5.67 | 1.88 | -- | -1.02 | -- | -2.06 | 0.819 | -- | 20.15 | 5 | -- | -- |
| 417.88 | 0.958 | 5.68 | 2.03 | 0.473 | -- | 0.157 | -- | 0.755 | 18.3 | -- | -- | -- | -- |
| 417.93 | 0.957 | 5.68 | 2.03 | 0.474 | -- | -- | -- | 0.756 | 18.2 | -- | -- | -- | -- |
| 400.18 | 0.932 | 5.63 | 2.24 | -- | -1.13 | -- | -- | 0.928 | -- | 19.9 | 5 | -- | -- |
| 502.22 | 1.04 | 5.69 | -- | 0.842 | -1.26 | -- | -- | 0.684 | 16.5 | 23.2 | 4 | -- | -- |
| 429.6 | 0.968 | 5.67 | 2.02 | -- | -- | -- | -- | 0.746 | -- | -- | -- | -- | -- |
| 526.65 | 1.07 | 5.73 | -- | 0.446 | -- | -- | -- | 0.53 | 18.4 | -- | -- | -- | -- |
| 526.58 | 1.07 | 5.7 | -- | -- | -0.661 | -- | -- | 0.612 | -- | 20.48 | 3 | -- | -- |
| 536.99 | 1.08 | 5.72 | -- | -- | -- | -- | -- | 0.522 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 343.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 2 | 343.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 3 | 344.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 21 |
| 7 | 344.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 10 | 345.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 31 | 347.96 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 33 | 348.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 35 | 348.07 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 40 | 348.52 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 41 | 348.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 43 | 348.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 50 | 349.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 51 | 349.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 53 | 349.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 61 | 349.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 70 | 349.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 85 | 350.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 110 | 350.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 143 | 350.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 144 | 350.79 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 225 | 351.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 265 | 351.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 287 | 351.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 311 | 351.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 360 | 352.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 19 |
| 400 | 352.23 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 458 | 352.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 509 | 352.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 527 | 352.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 559 | 353.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 582 | 353.26 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 592 | 353.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 616 | 353.52 | temperature | 25 | 10 | > th | dose dependent | sin | 9 | NA |
| 619 | 353.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 623 | 353.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 636 | 353.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 672 | 353.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 679 | 353.89 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 699 | 354.01 | temperature | 25 | 90 | > th | dose dependent | sin | 10 | NA |
| 726 | 354.12 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 752 | 354.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 784 | 354.39 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 800 | 354.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 802 | 354.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 819 | 354.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 869 | 354.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 910 | 355.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 982 | 355.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 989 | 355.61 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |