Os08g0540400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os08g0540400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 340.88 | 0.867 | 6.91 | 2.58 | 0.818 | -2.31 | -0.543 | -4.53 | 0.246 | 11.7 | 76.26 | 1366 | -- | -- |
| 361.82 | 0.886 | 6.91 | 2.12 | 0.787 | -2.47 | -0.721 | -- | 0.148 | 11.7 | 73 | 1372 | -- | -- |
| 341.84 | 0.861 | 6.9 | 2.54 | 0.841 | -2.3 | -- | -4.54 | 0.248 | 11.6 | 75 | 1355 | -- | -- |
| 363.56 | 0.888 | 6.9 | 2.07 | 0.79 | -2.49 | -- | -- | 0.16 | 11.5 | 73.22 | 1374 | -- | -- |
| 376.51 | 0.904 | 6.92 | 2.51 | -- | -2.33 | -- | -3.85 | 0.255 | -- | 75 | 1477 | -- | -- |
| 445.98 | 0.99 | 6.84 | 2.02 | 0.708 | -- | -0.785 | -- | 0.429 | 11.1 | -- | -- | -- | -- |
| 448.45 | 0.992 | 6.84 | 1.98 | 0.716 | -- | -- | -- | 0.425 | 10.8 | -- | -- | -- | -- |
| 391.96 | 0.922 | 6.92 | 2.14 | -- | -2.61 | -- | -- | 0.169 | -- | 74.95 | 1518 | -- | -- |
| 469.62 | 1.01 | 6.93 | -- | 0.879 | -2.16 | -- | -- | 0.0185 | 11.5 | 66 | 1316 | -- | -- |
| 480.18 | 1.02 | 6.86 | 1.97 | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
| 552.01 | 1.1 | 6.89 | -- | 0.702 | -- | -- | -- | 0.204 | 10.6 | -- | -- | -- | -- |
| 500.52 | 1.04 | 6.96 | -- | -- | -2.22 | -- | -- | -0.0407 | -- | 67 | 1494 | -- | -- |
| 582.31 | 1.13 | 6.91 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.43 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 6 | 331.81 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 10 | 334.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 12 | 335.05 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 13 | 335.15 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 17 | 335.87 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 18 | 336.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 23 | 337.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 24 | 337.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 33 | 339.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 45 | 342.08 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 51 | 342.40 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 53 | 342.46 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 55 | 342.55 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 77 | 343.18 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 82 | 343.31 | humidity | 80.0 | 1440 | > th | dose dependent | no | NA | NA |
| 95 | 343.70 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 100 | 343.84 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 107 | 343.93 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 169 | 345.29 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 217 | 345.96 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 233 | 346.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 234 | 346.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 237 | 346.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 239 | 346.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 245 | 346.44 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 248 | 346.46 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 253 | 346.51 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 255 | 346.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 263 | 346.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 302 | 347.08 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 342 | 347.59 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 343 | 347.59 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 344 | 347.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 352 | 347.67 | humidity | 90.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 368 | 347.89 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 372 | 348.01 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 441 | 348.67 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 443 | 348.70 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 447 | 348.75 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 462 | 348.98 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 471 | 349.04 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 479 | 349.10 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 495 | 349.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 521 | 349.40 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 549 | 349.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 557 | 349.66 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 578 | 349.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 587 | 349.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 604 | 350.11 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 633 | 350.30 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 22 |
| 648 | 350.40 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 649 | 350.40 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 664 | 350.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 670 | 350.58 | wind | 3.0 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 673 | 350.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 21 |
| 674 | 350.58 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 707 | 350.79 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 729 | 350.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 19 |
| 755 | 351.09 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 763 | 351.14 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 771 | 351.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 782 | 351.27 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 802 | 351.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 803 | 351.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 844 | 351.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 865 | 351.74 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 878 | 351.81 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 879 | 351.81 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 947 | 352.25 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 957 | 352.28 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 975 | 352.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 18 |
| 977 | 352.42 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 981 | 352.42 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 7 |