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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0539700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.61 (0.0585) R2 : 0.477
β1 : 0.768 (0.225) R2dD : 0.0155 R2D : -0.0538
β2 : 1.1 (0.15) R2dC : 0.0612 R2C : -0.0102
β3 : 1.99 (0.286) R2dE : 0.0687 R2E : 0.000305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.12 (1.07) R2dD*E : 0.11 R2D*E : 0.139
γ1 : 1.57 (0.128) R2dN8 : 0.246 R2N8 : 0.116
σ : 1.09
deviance : 542.87
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_____
C
peak time of C : 4.68
E
wheather : precipitation
threshold : 0.07299
memory length : 4834
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22
open length of G : 18.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
538.68 1.09 4.61 0.76 1.1 2.02 -1.26 9.11 1.56 4.68 0.07138 4835 22 18.9
611.07 1.15 4.66 1.33 1.16 2.92 -1.25 -- 1.76 4.44 0.07303 5380 22.5 18.4
542.87 1.09 4.61 0.768 1.1 1.99 -- 9.12 1.57 4.68 0.07299 4834 22 18.9
614.74 1.15 4.67 1.33 1.16 2.82 -- -- 1.73 4.44 0.08583 5377 22.5 18.4
606.16 1.15 4.62 0.803 -- 1.95 -- 9.29 1.59 -- 0.07746 4823 22 18.9
763.93 1.3 4.72 1.64 1.11 -- -1.05 -- 1.43 4.73 -- -- -- --
766.81 1.3 4.72 1.64 1.11 -- -- -- 1.43 4.76 -- -- -- --
659.53 1.2 4.69 0.949 -- 3.93 -- -- 1.67 -- 0.04528 1928 22.8 18
663.25 1.2 4.68 -- 1.11 2.97 -- -- 1.71 4.5 0.09013 5339 22.5 18.5
831.79 1.35 4.73 1.69 -- -- -- -- 1.46 -- -- -- -- --
838.03 1.35 4.76 -- 1.14 -- -- -- 1.25 4.72 -- -- -- --
629.46 1.17 4.71 -- -- 3.72 -- -- 1.55 -- 0.5893 7051 22.8 18.2
906.73 1.41 4.77 -- -- -- -- -- 1.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 521.49 precipitation 0.1 14400 > th dose dependent rect. 12 5
3 522.23 precipitation 0.1 14400 < th dose independent rect. 13 4
4 522.23 precipitation 0.1 14400 < th dose dependent rect. 13 4
6 522.56 precipitation 0.1 14400 > th dose independent rect. 13 4
31 535.53 precipitation 0.1 14400 < th dose independent rect. 18 2
32 535.53 precipitation 0.1 14400 < th dose dependent rect. 18 2
33 535.62 precipitation 0.1 14400 > th dose independent rect. 18 2
36 537.86 precipitation 0.1 14400 > th dose dependent rect. 18 2
37 538.26 precipitation 0.1 14400 > th dose dependent rect. 5 12
48 541.77 wind 9.0 14400 < th dose independent rect. 10 1
55 542.57 humidity 80.0 14400 > th dose independent rect. 13 3
56 543.04 wind 9.0 14400 < th dose independent rect. 8 3
65 544.27 humidity 80.0 14400 > th dose independent rect. 14 1
68 545.21 wind 3.0 14400 < th dose dependent rect. 4 1
70 545.47 wind 9.0 14400 > th dose independent rect. 10 1
71 545.61 wind 3.0 43200 < th dose dependent rect. 23 8
79 547.09 wind 9.0 14400 > th dose independent rect. 7 4
82 548.43 precipitation 0.1 4320 > th dose dependent rect. 22 19
83 548.54 humidity 80.0 14400 < th dose independent rect. 14 1
91 549.81 precipitation 0.1 4320 > th dose dependent rect. 2 15
94 550.09 precipitation 0.1 14400 < th dose independent rect. 12 8
95 550.09 precipitation 0.1 14400 < th dose dependent rect. 12 8
96 550.21 precipitation 0.1 14400 > th dose independent rect. 12 8
101 550.43 precipitation 0.1 14400 < th dose independent rect. 3 17
102 550.43 precipitation 0.1 14400 < th dose dependent rect. 3 17
106 550.52 precipitation 0.1 14400 > th dose independent rect. 3 17
108 550.73 wind 9.0 14400 > th dose dependent rect. 10 1
112 550.83 precipitation 0.1 14400 > th dose independent rect. 9 11
114 550.93 precipitation 0.1 14400 < th dose independent rect. 9 11
115 550.93 precipitation 0.1 14400 < th dose dependent rect. 9 11
121 551.53 wind 3.0 43200 < th dose independent rect. 5 2
124 552.00 precipitation 0.1 14400 > th dose independent rect. 5 12
125 552.04 wind 1.0 43200 > th dose dependent rect. 5 2
126 552.07 precipitation 0.1 4320 < th dose independent rect. 2 15
127 552.07 precipitation 0.1 4320 < th dose dependent rect. 2 15
131 552.20 precipitation 0.1 4320 > th dose independent rect. 2 15
132 552.29 precipitation 0.1 4320 < th dose independent rect. 23 18
133 552.29 precipitation 0.1 4320 < th dose dependent rect. 23 18
134 552.35 humidity 80.0 14400 > th dose dependent rect. 13 2
135 552.44 precipitation 0.1 14400 < th dose independent rect. 5 12
136 552.44 precipitation 0.1 14400 < th dose dependent rect. 5 12
137 552.47 precipitation 0.1 4320 > th dose independent rect. 23 18
152 553.49 precipitation 0.1 14400 > th dose independent rect. 7 13
154 553.58 precipitation 0.1 14400 < th dose independent rect. 7 13
155 553.58 precipitation 0.1 14400 < th dose dependent rect. 7 13
170 554.30 wind 3.0 43200 > th dose independent rect. 5 2
182 555.17 wind 3.0 43200 < th dose dependent rect. 3 5
184 555.47 precipitation 0.1 4320 > th dose dependent rect. 19 22
209 557.92 humidity 80.0 14400 > th dose dependent rect. 13 4
214 558.17 wind 9.0 14400 > th dose dependent rect. 6 5
249 561.06 precipitation 0.1 14400 > th dose independent sin 1 NA
250 561.15 precipitation 0.1 14400 < th dose independent sin 1 NA
251 561.15 precipitation 0.1 14400 < th dose dependent sin 1 NA
292 563.59 precipitation 0.1 4320 > th dose independent rect. 18 23
296 563.64 precipitation 0.1 4320 < th dose independent rect. 18 23
297 563.64 precipitation 0.1 4320 < th dose dependent rect. 18 23
318 564.81 humidity 50.0 14400 > th dose dependent rect. 14 1
319 564.89 wind 1.0 43200 > th dose independent rect. 1 1
325 565.06 humidity 90.0 14400 < th dose dependent rect. 14 1
360 566.98 humidity 80.0 14400 > th dose independent rect. 9 8
363 567.07 precipitation 0.1 14400 > th dose dependent rect. 23 21
366 567.14 humidity 80.0 14400 > th dose dependent rect. 16 1
370 567.42 precipitation 0.1 4320 > th dose dependent rect. 18 12
379 567.62 precipitation 0.1 14400 > th dose dependent rect. 2 18
384 567.90 precipitation 0.1 4320 > th dose dependent rect. 18 16
386 567.93 precipitation 0.1 14400 > th dose dependent sin 2 NA
407 568.36 wind 3.0 43200 < th dose independent rect. 23 9
419 568.61 wind 3.0 43200 < th dose independent rect. 1 7
422 568.73 precipitation 0.1 4320 > th dose dependent rect. 18 10
502 570.78 wind 1.0 14400 > th dose dependent rect. 24 5
586 572.67 wind 3.0 43200 > th dose independent rect. 1 7
599 572.89 humidity 80.0 14400 < th dose independent rect. 9 8
638 573.78 wind 3.0 43200 > th dose independent rect. 23 9
647 573.98 wind 1.0 43200 > th dose dependent rect. 23 9
648 573.99 wind 3.0 14400 < th dose independent rect. 24 1
725 575.49 precipitation 0.1 4320 > th dose independent sin 4 NA
727 575.50 precipitation 0.1 4320 < th dose independent sin 4 NA
728 575.50 precipitation 0.1 4320 < th dose dependent sin 4 NA
733 575.64 precipitation 0.1 4320 > th dose dependent sin 5 NA
753 575.97 wind 3.0 43200 < th dose independent rect. 1 12
881 578.36 humidity 70.0 14400 > th dose independent rect. 11 1
943 579.44 wind 3.0 43200 < th dose independent rect. 4 9
960 579.55 wind 3.0 43200 < th dose dependent sin 7 NA
988 580.04 precipitation 0.1 14400 > th dose dependent rect. 9 11
997 580.14 precipitation 0.1 14400 > th dose dependent rect. 7 13