Os08g0539400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein T10rga2-1A.
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Os08g0539400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance protein T10rga2-1A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.59 | 0.44 | 3 | -0.508 | 0.125 | 1.19 | 0.000697 | -9.75 | -0.000982 | 6 | 31.01 | 2 | -- | -- |
| 96.32 | 0.461 | 2.95 | 0.0418 | 0.139 | 0.227 | 0.0556 | -- | -0.00464 | 6.25 | 31.01 | 2 | -- | -- |
| 87.54 | 0.436 | 3 | -0.506 | 0.126 | 1.19 | -- | -9.77 | -0.000316 | 5.97 | 31.02 | 5 | -- | -- |
| 96.05 | 0.456 | 2.95 | 0.0412 | 0.146 | 0.266 | -- | -- | -0.00362 | 6.15 | 31.23 | 3 | -- | -- |
| 88.32 | 0.438 | 3.01 | -0.505 | -- | 1.17 | -- | -9.87 | -0.000546 | -- | 31.01 | 5 | -- | -- |
| 97.54 | 0.463 | 2.95 | 0.0613 | 0.111 | -- | 0.0302 | -- | -0.0195 | 7.25 | -- | -- | -- | -- |
| 97.54 | 0.462 | 2.95 | 0.0618 | 0.112 | -- | -- | -- | -0.0196 | 7.18 | -- | -- | -- | -- |
| 97.09 | 0.461 | 2.95 | 0.0493 | -- | 0.219 | -- | -- | -0.00394 | -- | 31.22 | 2 | -- | -- |
| 96.1 | 0.457 | 2.95 | -- | 0.147 | 0.27 | -- | -- | -0.00758 | 6.13 | 31.2 | 6 | -- | -- |
| 98.2 | 0.463 | 2.95 | 0.0639 | -- | -- | -- | -- | -0.0176 | -- | -- | -- | -- | -- |
| 97.64 | 0.462 | 2.95 | -- | 0.112 | -- | -- | -- | -0.0265 | 7.15 | -- | -- | -- | -- |
| 97.15 | 0.461 | 2.95 | -- | -- | 0.222 | -- | -- | -0.00914 | -- | 31.2 | 6 | -- | -- |
| 98.3 | 0.463 | 2.95 | -- | -- | -- | -- | -- | -0.0247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.69 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 2 | 86.79 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 5 | 87.06 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 139 | 88.78 | temperature | 30 | 10 | > th | dose dependent | sin | 8 | NA |
| 160 | 89.05 | temperature | 30 | 30 | > th | dose independent | sin | 7 | NA |
| 265 | 90.42 | temperature | 30 | 30 | < th | dose independent | sin | 7 | NA |
| 530 | 92.20 | temperature | 30 | 30 | > th | dose independent | no | NA | NA |
| 691 | 92.37 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 23 |
| 709 | 92.42 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |
| 839 | 92.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 899 | 93.01 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 1 |
| 964 | 93.34 | temperature | 30 | 30 | < th | dose independent | no | NA | NA |