Os08g0538800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0538800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.41 | 0.537 | 6.77 | 0.0959 | 0.613 | -1.32 | 1.55 | 8 | -0.443 | 12.5 | 24.8 | 1000 | -- | -- |
| 151.07 | 0.572 | 6.92 | -1.47 | 0.842 | -0.725 | 1.09 | -- | -0.752 | 12.2 | 13.55 | 3325 | -- | -- |
| 136.58 | 0.544 | 6.75 | 0.344 | 0.689 | -1.42 | -- | 8.61 | -0.509 | 11.6 | 26.29 | 1135 | -- | -- |
| 148.64 | 0.568 | 6.94 | -1.22 | 0.848 | -0.859 | -- | -- | -0.692 | 11.5 | 10.62 | 10252 | -- | -- |
| 160.79 | 0.591 | 6.77 | 0.3 | -- | -1.69 | -- | 8.31 | -0.417 | -- | 25.03 | 1025 | -- | -- |
| 158.01 | 0.589 | 6.99 | -1.76 | 0.837 | -- | 0.85 | -- | -0.937 | 11.7 | -- | -- | -- | -- |
| 160.91 | 0.594 | 6.99 | -1.73 | 0.837 | -- | -- | -- | -0.935 | 11.4 | -- | -- | -- | -- |
| 185.24 | 0.634 | 6.91 | -0.737 | -- | -1.11 | -- | -- | -0.523 | -- | -0.0806 | 25403 | -- | -- |
| 151.21 | 0.573 | 6.85 | -- | 0.81 | -1.51 | -- | -- | -0.29 | 11.4 | 6.124 | 46592 | -- | -- |
| 204.85 | 0.669 | 7.01 | -1.75 | -- | -- | -- | -- | -0.944 | -- | -- | -- | -- | -- |
| 239.74 | 0.724 | 6.95 | -- | 0.856 | -- | -- | -- | -0.743 | 11.6 | -- | -- | -- | -- |
| 191.37 | 0.644 | 6.86 | -- | -- | -1.57 | -- | -- | -0.28 | -- | 5.352 | 47001 | -- | -- |
| 285.77 | 0.789 | 6.96 | -- | -- | -- | -- | -- | -0.75 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.80 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 8 |
| 11 | 125.60 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 22 | 126.85 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 27 | 127.31 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 28 | 127.44 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 65 | 128.92 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 66 | 128.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 100 | 129.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 148 | 130.60 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 174 | 130.93 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 220 | 131.53 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 22 |
| 250 | 131.77 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 256 | 131.84 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 277 | 132.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 281 | 132.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 330 | 132.61 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 335 | 132.64 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 23 |
| 338 | 132.69 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 359 | 132.85 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 361 | 132.87 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 362 | 132.89 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 364 | 132.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 386 | 133.05 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 396 | 133.06 | temperature | 25 | 90 | < th | dose independent | sin | 12 | NA |
| 403 | 133.09 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 408 | 133.15 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 414 | 133.22 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 421 | 133.32 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 431 | 133.40 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 463 | 133.62 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 465 | 133.63 | wind | 7 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 477 | 133.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 486 | 133.80 | wind | 7 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 490 | 133.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 498 | 133.84 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 506 | 133.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 514 | 133.92 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 534 | 133.99 | wind | 7 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 542 | 134.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 553 | 134.08 | wind | 7 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 566 | 134.18 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 18 |
| 575 | 134.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 589 | 134.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 591 | 134.30 | wind | 9 | 14400 | > th | dose independent | sin | 6 | NA |
| 614 | 134.46 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 23 |
| 630 | 134.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 641 | 134.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 658 | 134.70 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 23 |
| 661 | 134.71 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 663 | 134.73 | temperature | 20 | 90 | > th | dose dependent | sin | 13 | NA |
| 676 | 134.77 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 678 | 134.78 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 23 |
| 683 | 134.80 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 749 | 135.15 | wind | 9 | 14400 | < th | dose independent | sin | 5 | NA |
| 770 | 135.23 | wind | 9 | 14400 | > th | dose dependent | sin | 5 | NA |
| 844 | 135.55 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 23 |
| 884 | 135.72 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 891 | 135.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 917 | 135.87 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 927 | 135.91 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 951 | 135.97 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 986 | 136.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 993 | 136.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 11 |