Os08g0538300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LysM domain-containing receptor-like kinase 3.
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Os08g0538300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LysM domain-containing receptor-like kinase 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.07 | 0.301 | 10.9 | -0.656 | 0.19 | 0.36 | 0.805 | -0.342 | -0.0716 | 20.7 | 20.22 | 101 | -- | -- |
| 41.66 | 0.301 | 10.9 | -0.608 | 0.182 | 0.366 | 0.808 | -- | -0.0652 | 20.7 | 20.2 | 107 | -- | -- |
| 42.65 | 0.306 | 10.9 | -0.687 | 0.23 | 0.317 | -- | -0.45 | -0.0682 | 19 | 20.22 | 101 | -- | -- |
| 43.65 | 0.308 | 10.9 | -0.621 | 0.214 | 0.368 | -- | -- | -0.0515 | 19.1 | 20 | 78 | -- | -- |
| 45.16 | 0.313 | 10.9 | -0.694 | -- | 0.338 | -- | -0.434 | -0.0736 | -- | 20.23 | 102 | -- | -- |
| 47.5 | 0.323 | 10.9 | -0.499 | 0.164 | -- | 0.882 | -- | 0.00902 | 20.6 | -- | -- | -- | -- |
| 48.55 | 0.326 | 10.9 | -0.52 | 0.238 | -- | -- | -- | 0.0131 | 17.8 | -- | -- | -- | -- |
| 45.51 | 0.314 | 10.9 | -0.69 | -- | 0.494 | -- | -- | -0.0654 | -- | 19.5 | 256 | -- | -- |
| 53.03 | 0.341 | 10.9 | -- | 0.234 | 0.248 | -- | -- | 0.032 | 18.6 | 20.29 | 78 | -- | -- |
| 51.5 | 0.335 | 10.9 | -0.527 | -- | -- | -- | -- | 0.00753 | -- | -- | -- | -- | -- |
| 55.67 | 0.349 | 10.8 | -- | 0.247 | -- | -- | -- | 0.071 | 17.7 | -- | -- | -- | -- |
| 55.82 | 0.348 | 10.8 | -- | -- | 0.268 | -- | -- | 0.0262 | -- | 20.25 | 115 | -- | -- |
| 58.83 | 0.358 | 10.8 | -- | -- | -- | -- | -- | 0.066 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.78 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 16 |
| 2 | 39.85 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 17 |
| 4 | 40.15 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 23 |
| 5 | 40.17 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 16 |
| 6 | 40.17 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 8 | 40.19 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 16 |
| 12 | 40.24 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 22 |
| 22 | 40.33 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 31 | 40.40 | temperature | 20 | 90 | < th | dose independent | sin | 10 | NA |
| 34 | 40.41 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 13 |
| 49 | 40.44 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 57 | 40.47 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 12 |
| 65 | 40.51 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 68 | 40.52 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 17 |
| 107 | 40.65 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 14 |
| 129 | 40.70 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 17 |
| 180 | 40.86 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 229 | 40.96 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 238 | 40.97 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 241 | 40.98 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 18 |
| 290 | 41.10 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 23 |
| 295 | 41.11 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 20 |
| 325 | 41.16 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 347 | 41.18 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 369 | 41.22 | temperature | 20 | 90 | > th | dose independent | rect. | 10 | 23 |
| 379 | 41.25 | temperature | 20 | 30 | > th | dose independent | sin | 14 | NA |
| 393 | 41.27 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 436 | 41.32 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 23 |
| 451 | 41.35 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 452 | 41.36 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 463 | 41.38 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 465 | 41.39 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 501 | 41.44 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 527 | 41.48 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 555 | 41.52 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 12 |
| 560 | 41.53 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 574 | 41.54 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 577 | 41.55 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 586 | 41.55 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 601 | 41.57 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 603 | 41.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 610 | 41.58 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 612 | 41.58 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 628 | 41.60 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 636 | 41.60 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 648 | 41.62 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 657 | 41.62 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 658 | 41.62 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 673 | 41.63 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 690 | 41.64 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 728 | 41.67 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 19 |
| 754 | 41.69 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 794 | 41.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 820 | 41.74 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 7 |
| 844 | 41.77 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 8 |
| 861 | 41.79 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 978 | 41.89 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 988 | 41.91 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 5 |