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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0538100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0494) R2 : 0.0771
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.53 (0.442) R2dE : 0.0663 R2E : 0.0612
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.257 (0.104) R2dN8 : 0.0159 R2N8 : 0.0108
σ : 0.928
deviance : 397.22
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.4657
memory length : 345
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.05
open length of G : 1.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.31 0.928 3.19 0.293 0.288 2.89 0.113 2.97 -0.221 18.2 0.5001 343 1.03 1.93
391.5 0.922 3.19 0.269 0.282 2.75 -0.0555 -- -0.223 18.4 0.4613 345 1.04 1.93
390.34 0.92 3.19 0.29 0.289 2.88 -- 2.88 -0.221 18.3 0.4999 343 1.04 1.93
391.51 0.922 3.19 0.27 0.282 2.75 -- -- -0.223 18.4 0.4601 345 1.04 1.93
394.41 0.925 3.18 0.282 -- 2.65 -- 2.84 -0.225 -- 0.4992 343 1.06 1.97
422.94 0.964 3.18 0.268 0.114 -- -0.136 -- -0.21 21.1 -- -- -- --
423.01 0.963 3.18 0.273 0.115 -- -- -- -0.21 20.9 -- -- -- --
395.39 0.926 3.18 0.269 -- 2.53 -- -- -0.228 -- 0.5 345 1.03 1.93
393.43 0.924 3.19 -- 0.278 2.75 -- -- -0.253 18.4 0.4544 345 1.06 1.91
423.76 0.962 3.18 0.273 -- -- -- -- -0.211 -- -- -- -- --
424.97 0.964 3.19 -- 0.115 -- -- -- -0.24 21.1 -- -- -- --
397.22 0.928 3.19 -- -- 2.53 -- -- -0.257 -- 0.4657 345 1.05 1.9
425.73 0.963 3.18 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 394.56 temperature 20.0 90 < th dose independent rect. 5 17
9 399.21 wind 1.0 270 < th dose dependent rect. 1 2
12 399.52 temperature 30.0 90 > th dose dependent rect. 10 1
15 399.96 temperature 20.0 30 > th dose independent sin 22 NA
19 400.24 temperature 20.0 90 < th dose independent sin 23 NA
20 400.28 temperature 30.0 90 > th dose independent rect. 10 1
22 400.37 temperature 20.0 90 < th dose dependent rect. 5 17
24 401.25 temperature 20.0 10 < th dose dependent rect. 5 18
37 402.76 wind 1.0 720 < th dose dependent rect. 4 1
39 402.86 temperature 20.0 270 < th dose independent rect. 13 6
51 403.66 temperature 20.0 270 < th dose dependent rect. 13 6
57 403.98 wind 3.0 720 < th dose dependent sin 18 NA
58 404.23 temperature 20.0 270 < th dose independent rect. 18 1
59 404.23 temperature 20.0 270 < th dose dependent rect. 18 1
62 404.37 wind 1.0 90 < th dose dependent rect. 4 1
64 404.66 wind 3.0 720 < th dose dependent rect. 10 14
65 404.77 temperature 30.0 270 > th dose dependent rect. 8 1
80 404.78 humidity 50.0 4320 < th dose dependent rect. 15 1
83 404.87 wind 1.0 270 < th dose independent rect. 2 1
86 404.94 temperature 20.0 90 < th dose independent rect. 7 15
89 405.08 temperature 20.0 90 < th dose dependent sin 23 NA
92 405.26 wind 3.0 270 < th dose dependent rect. 10 18
95 405.40 wind 7.0 10 > th dose dependent rect. 13 3
96 405.43 wind 3.0 720 < th dose dependent rect. 16 7
101 405.55 wind 1.0 720 < th dose independent rect. 4 1
103 405.59 temperature 30.0 270 > th dose independent rect. 8 1
119 405.74 wind 3.0 720 < th dose dependent rect. 15 9
123 405.82 wind 1.0 270 < th dose independent rect. 10 17
151 406.50 wind 1.0 90 < th dose independent rect. 4 1
154 406.52 wind 5.0 10 > th dose dependent rect. 20 2
165 406.66 wind 7.0 720 < th dose independent rect. 15 3
171 406.75 wind 3.0 720 < th dose dependent rect. 19 1
182 406.97 wind 7.0 720 < th dose independent rect. 17 1
186 407.00 wind 3.0 720 < th dose independent sin 17 NA
187 407.00 wind 7.0 10 > th dose independent rect. 13 3
194 407.08 wind 3.0 720 > th dose independent rect. 14 13
203 407.17 wind 3.0 720 > th dose independent rect. 14 11
214 407.31 wind 1.0 270 < th dose dependent rect. 7 21
223 407.38 temperature 20.0 90 < th dose dependent rect. 7 14
225 407.39 humidity 90.0 30 < th dose independent sin 14 NA
227 407.40 wind 7.0 720 < th dose independent rect. 13 5
228 407.40 temperature 20.0 90 < th dose independent rect. 16 6
234 407.46 temperature 20.0 10 < th dose independent rect. 5 5
239 407.49 wind 3.0 720 > th dose independent sin 17 NA
241 407.50 temperature 20.0 90 < th dose independent rect. 1 21
242 407.51 temperature 20.0 90 < th dose independent rect. 18 4
246 407.54 humidity 60.0 30 > th dose dependent rect. 16 13
249 407.55 wind 3.0 720 > th dose independent rect. 10 17
256 407.62 wind 5.0 720 > th dose independent rect. 12 1
260 407.66 humidity 90.0 30 < th dose independent rect. 19 14
286 407.80 humidity 90.0 10 < th dose independent rect. 19 6
287 407.80 temperature 20.0 10 < th dose independent rect. 5 11
307 407.90 wind 1.0 270 < th dose independent rect. 19 8
309 407.90 wind 3.0 270 < th dose dependent rect. 17 11
340 408.00 humidity 90.0 30 < th dose independent rect. 14 23
341 408.00 wind 1.0 270 < th dose dependent rect. 19 9
348 408.03 wind 7.0 720 < th dose independent rect. 15 19
349 408.04 humidity 50.0 1440 < th dose dependent rect. 13 1
378 408.17 temperature 20.0 10 < th dose dependent rect. 6 14
393 408.24 humidity 90.0 30 < th dose independent rect. 15 10
411 408.35 temperature 30.0 270 < th dose independent rect. 22 13
428 408.41 wind 3.0 720 < th dose independent rect. 16 8
460 408.53 wind 5.0 10 > th dose dependent rect. 13 9
477 408.61 wind 1.0 270 < th dose independent rect. 7 21
510 408.73 wind 3.0 270 < th dose dependent rect. 10 22
516 408.76 humidity 90.0 30 < th dose independent rect. 15 18
522 408.79 humidity 60.0 720 > th dose independent rect. 18 13
530 408.84 temperature 20.0 90 < th dose dependent rect. 5 5
539 408.88 humidity 70.0 720 > th dose independent rect. 18 4
542 408.88 wind 3.0 720 > th dose dependent rect. 12 2
547 408.89 wind 1.0 270 < th dose dependent rect. 1 12
584 409.01 wind 1.0 270 < th dose dependent rect. 1 7
633 409.16 wind 1.0 270 > th dose independent rect. 22 12
636 409.17 wind 5.0 10 > th dose independent rect. 20 2
638 409.17 wind 3.0 720 < th dose independent rect. 16 5
660 409.18 wind 1.0 270 < th dose dependent rect. 1 16
713 409.31 humidity 90.0 30 < th dose independent rect. 15 16
726 409.34 temperature 20.0 90 < th dose dependent rect. 11 10
744 409.41 wind 3.0 720 < th dose independent rect. 19 1
748 409.42 humidity 50.0 1440 < th dose independent rect. 13 1
753 409.44 wind 7.0 720 < th dose independent rect. 6 12
781 409.49 humidity 80.0 90 > th dose dependent rect. 7 21
809 409.60 wind 7.0 720 < th dose independent rect. 22 20
812 409.61 wind 9.0 720 < th dose dependent rect. 17 1
821 409.63 radiation 30.0 43200 < th dose independent rect. 17 13
838 409.68 humidity 90.0 30 < th dose independent rect. 11 22
844 409.70 wind 7.0 720 < th dose independent rect. 6 21
873 409.79 humidity 80.0 90 < th dose dependent rect. 20 2
882 409.83 wind 9.0 1440 < th dose dependent rect. 12 2
913 409.97 radiation 40.0 1440 < th dose independent rect. 17 16
918 409.98 radiation 40.0 1440 < th dose independent rect. 23 10
923 410.00 humidity 90.0 30 > th dose independent rect. 15 14
929 410.01 radiation 40.0 1440 < th dose independent rect. 7 2
941 410.04 humidity 90.0 30 > th dose independent rect. 17 12
952 410.08 wind 7.0 90 > th dose dependent rect. 13 1
967 410.15 precipitation 0.1 720 < th dose independent rect. 19 11
970 410.15 precipitation 0.1 720 < th dose dependent rect. 19 11
994 410.21 wind 7.0 10 > th dose dependent rect. 13 1