Os08g0537200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os08g0537200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.67 | 0.363 | 3.17 | -0.0347 | 0.143 | -0.634 | 0.108 | 2.3 | -0.0551 | 8.46 | 50.33 | 7 | -- | -- |
| 61.82 | 0.366 | 3.16 | -0.0474 | 0.146 | -0.315 | -0.0542 | -- | -0.0621 | 7.92 | 51.6 | 6 | -- | -- |
| 59.7 | 0.36 | 3.17 | -0.0326 | 0.144 | -0.633 | -- | 2.26 | -0.0553 | 8.11 | 50.36 | 6 | -- | -- |
| 61.82 | 0.366 | 3.16 | -0.0493 | 0.146 | -0.316 | -- | -- | -0.0623 | 7.98 | 51.52 | 6 | -- | -- |
| 60.84 | 0.363 | 3.17 | -0.031 | -- | -0.636 | -- | 2.28 | -0.0537 | -- | 50.34 | 6 | -- | -- |
| 63.06 | 0.372 | 3.17 | -0.0462 | 0.147 | -- | -0.0504 | -- | -0.0748 | 8.74 | -- | -- | -- | -- |
| 63.07 | 0.372 | 3.17 | -0.0477 | 0.147 | -- | -- | -- | -0.0748 | 8.82 | -- | -- | -- | -- |
| 62.98 | 0.37 | 3.17 | -0.0477 | -- | -0.317 | -- | -- | -0.0603 | -- | 51.34 | 6 | -- | -- |
| 61.89 | 0.366 | 3.16 | -- | 0.145 | -0.316 | -- | -- | -0.0568 | 8 | 51.42 | 6 | -- | -- |
| 64.3 | 0.375 | 3.17 | -0.0476 | -- | -- | -- | -- | -0.0737 | -- | -- | -- | -- | -- |
| 63.13 | 0.372 | 3.17 | -- | 0.147 | -- | -- | -- | -0.0695 | 8.84 | -- | -- | -- | -- |
| 63.04 | 0.37 | 3.17 | -- | -- | -0.318 | -- | -- | -0.0551 | -- | 51.48 | 6 | -- | -- |
| 64.36 | 0.374 | 3.17 | -- | -- | -- | -- | -- | -0.0684 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.75 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 1 |
| 9 | 52.15 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 13 | 52.15 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 17 | 52.27 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 18 | 52.37 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 2 |
| 21 | 52.61 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 42 | 52.85 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 48 | 53.40 | wind | 9 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 83 | 55.12 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 104 | 55.47 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 111 | 55.63 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 114 | 55.73 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 124 | 55.73 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 155 | 56.12 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 205 | 56.97 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 212 | 56.98 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 245 | 57.04 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 247 | 57.04 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 249 | 57.08 | humidity | 50 | 10 | > th | dose independent | rect. | 21 | 23 |
| 284 | 57.20 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 360 | 57.59 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 594 | 57.70 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 786 | 58.07 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 801 | 58.17 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 21 | 23 |
| 818 | 58.23 | humidity | 50 | 10 | > th | dose independent | sin | 8 | NA |
| 845 | 58.36 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 911 | 58.68 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |