Os08g0536400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0536400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.62 | 0.307 | 10.6 | -0.205 | 1.45 | 0.246 | 0.928 | -0.0671 | 0.158 | 16.3 | 24.1 | 11 | -- | -- |
| 42.63 | 0.304 | 10.6 | -0.219 | 1.44 | 0.253 | 0.954 | -- | 0.157 | 16.3 | 23.94 | 22 | -- | -- |
| 44.5 | 0.311 | 10.6 | -0.143 | 1.45 | 0.247 | -- | -0.247 | 0.181 | 16.2 | 23.7 | 10 | -- | -- |
| 45.02 | 0.313 | 10.6 | -0.214 | 1.44 | 0.247 | -- | -- | 0.153 | 16.2 | 23.91 | 13 | -- | -- |
| 150.5 | 0.575 | 10.6 | -0.283 | -- | -0.0139 | -- | -0.305 | 0.0247 | -- | 23.4 | 16 | -- | -- |
| 46.84 | 0.321 | 10.6 | -0.326 | 1.37 | -- | 0.977 | -- | 0.0352 | 16.4 | -- | -- | -- | -- |
| 49.42 | 0.329 | 10.6 | -0.318 | 1.38 | -- | -- | -- | 0.0404 | 16.4 | -- | -- | -- | -- |
| 115.74 | 0.501 | 10.6 | -0.125 | -- | -0.556 | -- | -- | 0.165 | -- | 27.71 | 325 | -- | -- |
| 46.17 | 0.316 | 10.6 | -- | 1.45 | 0.27 | -- | -- | 0.183 | 16.2 | 23.9 | 20 | -- | -- |
| 151.09 | 0.574 | 10.6 | -0.372 | -- | -- | -- | -- | 0.004 | -- | -- | -- | -- | -- |
| 52.09 | 0.338 | 10.6 | -- | 1.38 | -- | -- | -- | 0.0758 | 16.4 | -- | -- | -- | -- |
| 107.44 | 0.483 | 10.6 | -- | -- | -0.985 | -- | -- | -0.0441 | -- | 28.21 | 367 | -- | -- |
| 154.75 | 0.581 | 10.6 | -- | -- | -- | -- | -- | 0.0453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 10 |
| 6 | 36.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 11 | 36.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 47 | 37.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 66 | 38.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 67 | 38.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 16 |
| 69 | 38.11 | temperature | 10 | 30 | > th | dose dependent | sin | 5 | NA |
| 74 | 38.18 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 80 | 38.20 | temperature | 20 | 10 | > th | dose dependent | sin | 5 | NA |
| 103 | 38.40 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 10 |
| 113 | 38.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 127 | 38.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 210 | 39.23 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 20 |
| 217 | 39.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 305 | 39.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 328 | 39.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 424 | 40.15 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 16 |
| 453 | 40.23 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 3 |
| 464 | 40.26 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 9 |
| 467 | 40.27 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 18 |
| 477 | 40.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 510 | 40.37 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 6 |
| 577 | 40.53 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 16 |
| 597 | 40.58 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 618 | 40.62 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 5 |
| 632 | 40.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 634 | 40.65 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 7 |
| 682 | 40.72 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 687 | 40.73 | temperature | 25 | 30 | > th | dose independent | rect. | 18 | 18 |
| 741 | 40.82 | temperature | 25 | 10 | > th | dose independent | rect. | 22 | 14 |
| 747 | 40.83 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 20 |
| 764 | 40.86 | temperature | 25 | 10 | > th | dose independent | rect. | 22 | 16 |
| 772 | 40.87 | temperature | 15 | 90 | > th | dose independent | rect. | 9 | 14 |
| 787 | 40.90 | humidity | 50 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 830 | 40.99 | radiation | 40 | 10 | < th | dose independent | rect. | 1 | 17 |
| 835 | 40.99 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 880 | 41.07 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 884 | 41.08 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 14 |
| 929 | 41.14 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 938 | 41.15 | radiation | 30 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 950 | 41.17 | wind | 7 | 10 | < th | dose independent | rect. | 18 | 18 |