Os08g0536200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os08g0536200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.5 | 0.503 | 14.8 | 0.239 | 0.679 | -0.762 | 0.269 | -1.01 | -0.256 | 9.24 | 22.13 | 1496 | -- | -- |
| 116.85 | 0.503 | 14.8 | 0.542 | 0.666 | -0.729 | 0.29 | -- | -0.184 | 9.11 | 22.29 | 1362 | -- | -- |
| 114.76 | 0.499 | 14.8 | 0.245 | 0.676 | -0.76 | -- | -1.01 | -0.257 | 9.29 | 22.13 | 1487 | -- | -- |
| 117.1 | 0.504 | 14.8 | 0.555 | 0.67 | -0.734 | -- | -- | -0.183 | 9.21 | 22.3 | 1451 | -- | -- |
| 132.92 | 0.537 | 14.8 | 0.346 | -- | -0.782 | -- | -0.6 | -0.2 | -- | 22.34 | 811 | -- | -- |
| 137.29 | 0.549 | 14.8 | 0.289 | 0.676 | -- | 0.226 | -- | -0.425 | 9.41 | -- | -- | -- | -- |
| 137.48 | 0.549 | 14.8 | 0.297 | 0.674 | -- | -- | -- | -0.424 | 9.46 | -- | -- | -- | -- |
| 134.14 | 0.539 | 14.8 | 0.561 | -- | -0.802 | -- | -- | -0.154 | -- | 22.2 | 808 | -- | -- |
| 124.28 | 0.519 | 14.8 | -- | 0.627 | -0.592 | -- | -- | -0.276 | 9.04 | 22.3 | 1162 | -- | -- |
| 164.16 | 0.599 | 14.8 | 0.293 | -- | -- | -- | -- | -0.422 | -- | -- | -- | -- | -- |
| 139.8 | 0.553 | 14.8 | -- | 0.674 | -- | -- | -- | -0.458 | 9.42 | -- | -- | -- | -- |
| 141.58 | 0.554 | 14.8 | -- | -- | -0.695 | -- | -- | -0.226 | -- | 22.4 | 802 | -- | -- |
| 166.42 | 0.602 | 14.8 | -- | -- | -- | -- | -- | -0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.98 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 3 | 115.72 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 23 | 116.01 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 32 | 116.11 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 50 | 116.28 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 52 | 116.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 53 | 116.29 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 64 | 116.36 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 71 | 116.40 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 92 | 116.53 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 101 | 116.60 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 119 | 116.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 123 | 116.80 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 137 | 116.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 140 | 116.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 142 | 116.90 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 143 | 116.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 149 | 116.94 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 177 | 117.14 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 178 | 117.16 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 184 | 117.18 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 20 |
| 186 | 117.18 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 207 | 117.32 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 6 |
| 265 | 117.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 271 | 117.54 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 291 | 117.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 293 | 117.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 319 | 117.76 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 337 | 117.84 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 360 | 117.92 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 376 | 117.98 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 382 | 117.99 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 401 | 118.03 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 403 | 118.03 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 413 | 118.06 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 417 | 118.07 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 438 | 118.12 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 455 | 118.15 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 494 | 118.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 496 | 118.26 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 539 | 118.37 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 542 | 118.38 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 543 | 118.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 552 | 118.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 594 | 118.49 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 634 | 118.54 | temperature | 30.0 | 720 | > th | dose independent | sin | 9 | NA |
| 642 | 118.55 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 656 | 118.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 664 | 118.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 685 | 118.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 700 | 118.66 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 731 | 118.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 748 | 118.75 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 787 | 118.84 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 839 | 118.96 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 872 | 119.03 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 893 | 119.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 14 | 17 |
| 896 | 119.06 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 899 | 119.07 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 913 | 119.09 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 916 | 119.10 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 930 | 119.12 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 955 | 119.15 | temperature | 30.0 | 720 | < th | dose independent | sin | 8 | NA |
| 963 | 119.16 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 994 | 119.20 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 16 |