Os08g0535800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : No apical meristem (NAM) protein domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0535800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : No apical meristem (NAM) protein domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.56 | 0.324 | 13.3 | 2.15 | 0.168 | -1.45 | -0.499 | 1.5 | 0.318 | 10.5 | 26.27 | 1198 | -- | -- |
| 48.3 | 0.324 | 13.3 | 1.83 | 0.16 | -1.26 | -0.602 | -- | 0.228 | 9.91 | 26.55 | 1208 | -- | -- |
| 48.43 | 0.324 | 13.3 | 2.15 | 0.184 | -1.43 | -- | 1.64 | 0.323 | 11.5 | 26.3 | 1211 | -- | -- |
| 49.23 | 0.327 | 13.3 | 1.78 | 0.189 | -1.27 | -- | -- | 0.241 | 11.4 | 26.28 | 1208 | -- | -- |
| 49.92 | 0.329 | 13.3 | 2.3 | -- | -1.58 | -- | 2.15 | 0.377 | -- | 25.97 | 1160 | -- | -- |
| 111.54 | 0.495 | 13.3 | 1.4 | 0.412 | -- | -0.148 | -- | 0.19 | 12.2 | -- | -- | -- | -- |
| 111.63 | 0.495 | 13.3 | 1.39 | 0.413 | -- | -- | -- | 0.19 | 12.3 | -- | -- | -- | -- |
| 50.8 | 0.332 | 13.3 | 1.8 | -- | -1.38 | -- | -- | 0.288 | -- | 25.82 | 1152 | -- | -- |
| 125.29 | 0.521 | 13.4 | -- | 0.25 | -0.896 | -- | -- | -0.0768 | 11.4 | 28.47 | 1188 | -- | -- |
| 122.35 | 0.517 | 13.3 | 1.38 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 162.64 | 0.597 | 13.4 | -- | 0.394 | -- | -- | -- | 0.035 | 12.1 | -- | -- | -- | -- |
| 128.52 | 0.528 | 13.4 | -- | -- | -0.986 | -- | -- | -0.0562 | -- | 28 | 1142 | -- | -- |
| 172.41 | 0.613 | 13.4 | -- | -- | -- | -- | -- | 0.0308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 49 | 50.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 64 | 50.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 69 | 50.76 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 97 | 50.87 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 102 | 50.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 114 | 50.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 318 | 52.64 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 347 | 53.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 360 | 53.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 382 | 53.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 385 | 53.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 407 | 53.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 433 | 54.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 439 | 54.17 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 448 | 54.21 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 481 | 54.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 492 | 54.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 495 | 54.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 512 | 54.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 514 | 54.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 542 | 54.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 548 | 54.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 570 | 54.48 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 583 | 54.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 652 | 54.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 688 | 54.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 724 | 54.79 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 912 | 55.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 935 | 55.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 938 | 55.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 9 |