Os08g0535400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os08g0535400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.41 | 0.267 | 13.5 | 0.564 | 0.942 | 0.387 | 0.248 | -0.561 | 0.454 | 0.942 | 20.3 | 103 | -- | -- |
| 33.69 | 0.27 | 13.5 | 0.66 | 0.95 | 0.428 | 0.507 | -- | 0.474 | 0.976 | 20.2 | 113 | -- | -- |
| 32.62 | 0.266 | 13.5 | 0.536 | 0.941 | 0.377 | -- | -0.652 | 0.448 | 0.943 | 20.44 | 105 | -- | -- |
| 33.81 | 0.271 | 13.5 | 0.581 | 0.942 | 0.564 | -- | -- | 0.471 | 1 | 19.3 | 147 | -- | -- |
| 79.13 | 0.414 | 13.5 | 0.507 | -- | 0.452 | -- | -0.398 | 0.416 | -- | 21.22 | 969 | -- | -- |
| 40.64 | 0.299 | 13.5 | 0.781 | 0.856 | -- | 0.469 | -- | 0.555 | 0.895 | -- | -- | -- | -- |
| 41.57 | 0.302 | 13.5 | 0.764 | 0.855 | -- | -- | -- | 0.552 | 0.89 | -- | -- | -- | -- |
| 73.73 | 0.4 | 13.5 | 0.587 | -- | 0.576 | -- | -- | 0.362 | -- | 24.92 | 968 | -- | -- |
| 41.57 | 0.3 | 13.6 | -- | 0.961 | 0.797 | -- | -- | 0.396 | 1.16 | 19.21 | 236 | -- | -- |
| 87.14 | 0.436 | 13.5 | 0.795 | -- | -- | -- | -- | 0.568 | -- | -- | -- | -- | -- |
| 56.93 | 0.353 | 13.5 | -- | 0.867 | -- | -- | -- | 0.467 | 0.928 | -- | -- | -- | -- |
| 83 | 0.424 | 13.6 | -- | -- | 0.768 | -- | -- | 0.255 | -- | 25 | 980 | -- | -- |
| 103.82 | 0.476 | 13.5 | -- | -- | -- | -- | -- | 0.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.94 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 9 |
| 2 | 30.94 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 3 | 31.02 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 21 |
| 4 | 31.05 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 9 | 31.24 | temperature | 20 | 90 | < th | dose independent | sin | 10 | NA |
| 11 | 31.28 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 14 | 31.34 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 16 |
| 15 | 31.37 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 10 |
| 20 | 31.44 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 21 | 31.45 | temperature | 20 | 90 | > th | dose independent | sin | 12 | NA |
| 25 | 31.49 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 18 |
| 27 | 31.51 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 63 | 31.85 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 66 | 31.86 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 14 |
| 68 | 31.86 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 16 |
| 74 | 31.89 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 10 |
| 80 | 31.91 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 113 | 31.99 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 18 |
| 135 | 32.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 148 | 32.08 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 219 | 32.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 259 | 32.29 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 14 |
| 265 | 32.31 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |
| 267 | 32.32 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 12 |
| 271 | 32.33 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 16 |
| 323 | 32.46 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 358 | 32.51 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 394 | 32.57 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 22 |
| 442 | 32.64 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 23 |
| 487 | 32.71 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 501 | 32.72 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 23 |
| 523 | 32.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 524 | 32.76 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 564 | 32.81 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 572 | 32.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 636 | 32.93 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 651 | 32.96 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 5 |
| 655 | 32.96 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 677 | 32.99 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 694 | 33.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 708 | 33.04 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 748 | 33.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 769 | 33.12 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 22 |
| 782 | 33.14 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 810 | 33.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 812 | 33.19 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 817 | 33.19 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 22 |
| 855 | 33.24 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 862 | 33.24 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 886 | 33.26 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |