FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0535200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MtN3-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0407) R2 : 0.0156
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.231 (0.0857) R2dN8 : 0.0202 R2N8 : 0.0156
σ : 0.766
deviance : 269.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.8 0.748 2.97 0.0455 0.312 -5.1 -0.482 20.2 0.211 4.11 0.1 30 -- --
264.59 0.763 3.01 -0.0455 0.283 0.47 -0.327 -- 0.22 3.97 0.1 30 -- --
258.45 0.749 2.96 0.0478 0.311 -5.01 -- 19.9 0.214 4.25 0.07294 30 -- --
262.57 0.755 3.01 -0.0703 0.28 1.05 -- -- 0.23 4.16 0.0002507 18 -- --
263.56 0.756 2.97 0.049 -- -4.4 -- 17.9 0.221 -- 0.4999 30 -- --
264.86 0.763 3.01 -0.0375 0.285 -- -0.31 -- 0.219 3.95 -- -- -- --
265.14 0.763 3.01 -0.0336 0.283 -- -- -- 0.221 3.85 -- -- -- --
266.4 0.76 3 -0.0539 -- 1.34 -- -- 0.241 -- 0.4823 12 -- --
262.41 0.754 3.01 -- 0.279 1.35 -- -- 0.239 4.07 0.0002345 12 -- --
269.54 0.767 3.01 -0.0219 -- -- -- -- 0.228 -- -- -- -- --
265.17 0.762 3.01 -- 0.282 -- -- -- 0.224 3.85 -- -- -- --
265.76 0.759 3.01 -- -- 1.65 -- -- 0.243 -- 0.1122 6 -- --
269.55 0.766 3.01 -- -- -- -- -- 0.231 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 245.15 atmosphere 1005.0 30 > th dose dependent rect. 4 1
2 245.99 wind 1.0 30 > th dose dependent rect. 4 1
3 246.18 temperature 15.0 30 > th dose independent rect. 5 23
4 246.27 wind 1.0 30 > th dose independent rect. 4 1
5 247.15 temperature 25.0 30 > th dose independent rect. 4 1
8 247.62 humidity 90.0 10 < th dose independent rect. 4 1
10 247.89 temperature 25.0 90 > th dose dependent rect. 4 1
12 248.10 wind 7.0 30 > th dose dependent rect. 21 14
15 248.38 temperature 20.0 30 > th dose dependent rect. 1 6
16 248.39 temperature 20.0 270 > th dose dependent rect. 1 4
18 248.60 wind 7.0 30 > th dose independent rect. 20 14
21 248.69 precipitation 0.1 30 < th dose independent rect. 5 23
22 248.69 precipitation 0.1 30 < th dose dependent rect. 5 23
24 248.89 wind 7.0 30 > th dose dependent rect. 17 18
38 249.68 temperature 20.0 270 > th dose dependent rect. 24 7
40 249.72 atmosphere 1005.0 10 > th dose dependent rect. 4 3
41 249.77 radiation 1.0 30 < th dose dependent rect. 4 14
45 249.88 atmosphere 1005.0 270 > th dose dependent rect. 1 4
48 250.00 wind 9.0 30 < th dose independent rect. 5 23
51 250.23 wind 1.0 30 > th dose independent rect. 5 23
52 250.26 atmosphere 1005.0 30 > th dose independent rect. 4 1
56 250.36 wind 5.0 30 < th dose independent rect. 4 1
59 250.37 humidity 80.0 30 > th dose independent rect. 4 1
61 250.38 temperature 10.0 30 > th dose independent rect. 4 1
63 250.38 temperature 30.0 30 < th dose independent rect. 4 1
64 250.38 humidity 50.0 30 > th dose independent rect. 4 1
68 250.38 atmosphere 1010.0 30 < th dose independent rect. 4 1
70 250.38 radiation 1.0 30 < th dose independent rect. 4 1
76 250.39 radiation 20.0 30 < th dose dependent rect. 4 1
81 250.42 precipitation 0.1 30 < th dose independent rect. 4 1
82 250.42 precipitation 0.1 30 < th dose dependent rect. 4 1
83 250.45 atmosphere 1005.0 30 > th dose independent rect. 4 3
93 250.89 humidity 50.0 30 > th dose dependent rect. 4 1
94 250.97 atmosphere 995.0 30 > th dose independent rect. 5 23
98 251.10 wind 9.0 30 < th dose dependent rect. 4 1
106 251.34 temperature 30.0 30 < th dose dependent rect. 4 1
109 251.40 temperature 20.0 30 > th dose dependent rect. 4 3
111 251.47 atmosphere 1015.0 30 < th dose dependent rect. 4 1
113 251.64 temperature 15.0 30 > th dose independent rect. 7 21
116 251.77 wind 7.0 1440 > th dose independent rect. 2 1
119 251.77 wind 7.0 1440 > th dose dependent rect. 2 1
127 251.83 radiation 1.0 30 < th dose independent rect. 4 14
130 251.86 atmosphere 1005.0 270 > th dose independent rect. 1 4
136 251.98 wind 1.0 10 < th dose dependent rect. 22 4
138 252.00 temperature 20.0 30 > th dose independent rect. 4 3
140 252.03 wind 1.0 10 < th dose dependent rect. 15 11
141 252.04 wind 1.0 10 < th dose dependent rect. 24 2
159 252.25 wind 1.0 10 < th dose dependent rect. 11 15
193 252.55 humidity 50.0 30 > th dose independent rect. 5 23
197 252.65 wind 7.0 30 > th dose dependent sin 11 NA
210 252.79 radiation 1.0 30 < th dose dependent rect. 4 10
230 252.96 atmosphere 1010.0 30 < th dose independent rect. 22 6
236 253.01 temperature 15.0 30 > th dose independent rect. 22 6
245 253.16 wind 1.0 10 > th dose independent rect. 7 21
247 253.17 radiation 20.0 14400 < th dose independent rect. 5 1
252 253.26 atmosphere 1005.0 90 > th dose independent rect. 1 6
254 253.31 radiation 1.0 30 < th dose independent rect. 4 18
262 253.37 wind 7.0 1440 < th dose independent rect. 5 1
264 253.37 temperature 10.0 1440 > th dose independent rect. 5 1
267 253.37 temperature 30.0 1440 < th dose independent rect. 5 1
271 253.37 humidity 50.0 1440 > th dose independent rect. 5 1
280 253.37 atmosphere 995.0 1440 > th dose independent rect. 5 1
281 253.37 atmosphere 1015.0 1440 < th dose independent rect. 5 1
282 253.37 radiation 20.0 1440 < th dose independent rect. 5 1
291 253.37 temperature 10.0 1440 > th dose independent rect. 6 23
296 253.38 atmosphere 1010.0 30 < th dose independent rect. 5 23
300 253.43 radiation 1.0 30 < th dose dependent rect. 4 18
303 253.46 wind 9.0 30 < th dose dependent rect. 5 23
307 253.49 wind 3.0 30 < th dose independent rect. 4 3
314 253.54 wind 7.0 30 > th dose dependent rect. 17 5
319 253.60 temperature 20.0 270 > th dose independent rect. 1 4
321 253.62 wind 7.0 30 > th dose independent sin 10 NA
366 253.85 wind 1.0 10 < th dose independent rect. 24 2
381 253.88 humidity 90.0 10 < th dose independent rect. 4 3
389 253.92 precipitation 0.1 10 < th dose independent rect. 7 21
391 253.92 precipitation 0.1 10 < th dose dependent rect. 7 21
416 254.10 wind 5.0 30 < th dose dependent rect. 4 3
418 254.11 wind 7.0 90 > th dose independent rect. 21 1
422 254.14 wind 7.0 30 > th dose independent rect. 20 9
435 254.17 wind 7.0 30 > th dose dependent rect. 21 8
442 254.18 wind 7.0 90 > th dose dependent rect. 21 1
446 254.19 wind 7.0 30 > th dose independent rect. 21 5
449 254.19 radiation 1.0 30 < th dose independent rect. 4 10
477 254.21 wind 1.0 10 < th dose independent rect. 15 11
489 254.21 wind 1.0 10 < th dose dependent rect. 6 21
491 254.22 precipitation 0.1 90 > th dose independent rect. 21 1
495 254.22 precipitation 0.1 90 > th dose dependent rect. 21 1
498 254.23 wind 1.0 10 < th dose independent rect. 17 9
502 254.24 wind 1.0 10 < th dose independent rect. 21 5
516 254.27 wind 1.0 10 < th dose independent rect. 11 15
527 254.33 temperature 15.0 270 > th dose independent rect. 5 20
530 254.34 temperature 20.0 30 > th dose independent rect. 4 18
541 254.38 atmosphere 1010.0 10 < th dose independent rect. 22 11
553 254.44 wind 1.0 10 < th dose dependent sin 16 NA
566 254.47 precipitation 0.1 10 > th dose independent rect. 21 1
580 254.47 precipitation 0.1 10 > th dose dependent rect. 21 1
624 254.53 wind 3.0 10 < th dose dependent rect. 1 6
627 254.54 humidity 80.0 30 > th dose independent rect. 4 3
632 254.58 temperature 25.0 720 < th dose dependent rect. 13 2
633 254.58 wind 1.0 10 < th dose dependent rect. 4 23
635 254.59 atmosphere 1005.0 30 > th dose independent rect. 4 6
650 254.69 precipitation 0.1 10 < th dose independent rect. 22 6
653 254.69 precipitation 0.1 10 < th dose dependent rect. 22 6
662 254.75 wind 7.0 30 < th dose independent sin 10 NA
663 254.75 wind 1.0 10 > th dose independent rect. 22 6
669 254.78 wind 1.0 10 < th dose dependent rect. 8 19
692 254.91 wind 9.0 30 < th dose independent rect. 7 21
702 255.01 temperature 15.0 1440 > th dose independent rect. 8 18
703 255.01 precipitation 0.1 30 > th dose independent rect. 21 21
713 255.05 temperature 15.0 1440 > th dose independent rect. 15 8
728 255.12 temperature 15.0 1440 > th dose independent rect. 6 20
738 255.17 precipitation 0.1 30 < th dose independent rect. 4 3
739 255.17 precipitation 0.1 30 < th dose dependent rect. 4 3
744 255.18 temperature 10.0 30 > th dose independent rect. 4 3
746 255.18 temperature 30.0 30 < th dose independent rect. 4 3
747 255.18 humidity 50.0 30 > th dose independent rect. 4 3
751 255.18 atmosphere 1015.0 30 < th dose independent rect. 4 3
796 255.29 atmosphere 995.0 30 > th dose independent rect. 7 21
831 255.45 temperature 25.0 90 < th dose dependent rect. 16 1
845 255.48 temperature 30.0 30 < th dose independent rect. 5 23
851 255.49 humidity 90.0 720 < th dose independent rect. 11 6
894 255.54 temperature 30.0 30 < th dose independent rect. 22 6
895 255.54 humidity 50.0 30 > th dose independent rect. 22 6
898 255.54 atmosphere 995.0 30 > th dose independent rect. 22 6
899 255.54 radiation 1.0 30 < th dose independent rect. 22 6
908 255.54 temperature 10.0 30 > th dose independent rect. 4 18
910 255.54 temperature 15.0 30 > th dose independent rect. 7 18
911 255.54 atmosphere 1015.0 30 < th dose independent rect. 4 18
914 255.54 radiation 1.0 30 < th dose dependent rect. 22 6
919 255.55 wind 9.0 30 < th dose independent rect. 22 6
920 255.56 precipitation 0.1 10 > th dose dependent rect. 4 19
921 255.57 temperature 15.0 270 > th dose independent rect. 19 6
984 255.65 temperature 15.0 1440 > th dose independent rect. 8 10
994 255.67 temperature 15.0 1440 > th dose independent rect. 18 5
1000 255.69 temperature 15.0 30 > th dose independent rect. 18 10