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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0533300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid-binding ACT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.81 (0.0329) R2 : 0.18
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.74 (0.0806) R2dC : 0.152 R2C : 0.142
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.28 (0.069) R2dN8 : 0.0382 R2N8 : 0.0281
σ : 0.619
deviance : 174.97
__
_____
C
peak time of C : 9.55
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.29 0.597 4.71 0.398 0.735 0.00524 0.606 -2.59 -0.117 9.32 18.4 3876 -- --
164.14 0.597 4.79 0.35 0.689 0.793 0.529 -- -0.135 9.31 18.9 6878 -- --
162.58 0.594 4.71 0.409 0.743 -0.0103 -- -2.54 -0.115 9.31 18.39 3934 -- --
163.09 0.595 4.79 0.296 0.715 1.02 -- -- -0.183 9.39 16.3 5504 -- --
193.87 0.648 4.73 0.432 -- 0.0362 -- -2.61 -0.109 -- 18.3 3854 -- --
173.48 0.617 4.82 -0.147 0.744 -- 0.561 -- -0.295 9.36 -- -- -- --
174.56 0.619 4.82 -0.125 0.739 -- -- -- -0.294 9.54 -- -- -- --
194.04 0.649 4.81 0.342 -- 1.17 -- -- -0.153 -- 16.4 6732 -- --
164.65 0.598 4.8 -- 0.734 0.988 -- -- -0.227 9.46 15.17 6916 -- --
206.79 0.672 4.84 -0.131 -- -- -- -- -0.292 -- -- -- -- --
174.97 0.619 4.81 -- 0.74 -- -- -- -0.28 9.55 -- -- -- --
196.13 0.652 4.82 -- -- 1.02 -- -- -0.223 -- 15.16 6651 -- --
207.24 0.672 4.83 -- -- -- -- -- -0.277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.13 wind 9.0 14400 > th dose independent rect. 20 1
2 155.58 wind 9.0 14400 < th dose independent rect. 20 1
3 155.85 wind 9.0 14400 > th dose dependent rect. 19 2
5 156.09 wind 7.0 14400 > th dose independent rect. 6 1
7 156.20 wind 5.0 43200 < th dose independent rect. 23 1
8 156.20 wind 9.0 43200 > th dose dependent rect. 16 15
9 156.29 wind 9.0 43200 > th dose independent rect. 16 16
10 156.35 wind 9.0 43200 < th dose independent rect. 20 4
11 156.43 radiation 1.0 14400 < th dose dependent rect. 20 7
12 156.48 wind 7.0 14400 < th dose independent rect. 6 1
13 156.51 wind 9.0 43200 > th dose dependent rect. 16 13
14 156.54 wind 5.0 43200 > th dose independent rect. 23 1
18 156.68 atmosphere 1000.0 43200 < th dose dependent rect. 8 10
19 156.69 wind 9.0 43200 < th dose independent rect. 20 6
24 156.73 temperature 25.0 90 > th dose dependent rect. 2 3
36 156.85 temperature 25.0 90 > th dose independent rect. 2 2
40 156.88 wind 9.0 43200 < th dose independent rect. 16 16
42 156.88 wind 9.0 43200 > th dose dependent rect. 16 8
57 157.03 atmosphere 1000.0 43200 < th dose dependent rect. 11 2
58 157.03 wind 9.0 14400 > th dose dependent rect. 19 4
59 157.04 radiation 10.0 14400 < th dose independent rect. 17 13
60 157.04 temperature 20.0 30 > th dose independent rect. 5 21
68 157.07 temperature 25.0 90 > th dose independent rect. 1 4
70 157.08 wind 9.0 14400 > th dose dependent rect. 19 6
71 157.08 temperature 15.0 90 > th dose dependent rect. 19 6
90 157.17 temperature 25.0 270 > th dose dependent rect. 2 1
91 157.17 wind 9.0 14400 > th dose dependent rect. 19 9
118 157.36 wind 9.0 43200 < th dose independent rect. 17 11
130 157.40 wind 9.0 43200 > th dose independent rect. 17 12
141 157.47 wind 9.0 43200 > th dose independent rect. 20 6
145 157.48 atmosphere 1000.0 43200 < th dose dependent rect. 9 1
154 157.52 wind 7.0 43200 < th dose independent rect. 18 6
161 157.53 wind 9.0 14400 > th dose dependent rect. 19 15
187 157.64 atmosphere 995.0 43200 > th dose independent rect. 12 11
189 157.65 atmosphere 1000.0 43200 < th dose dependent sin 23 NA
190 157.65 atmosphere 1005.0 30 > th dose dependent rect. 2 3
192 157.66 wind 7.0 14400 > th dose dependent rect. 6 1
193 157.66 wind 9.0 43200 > th dose dependent rect. 17 2
215 157.79 temperature 10.0 90 > th dose dependent rect. 5 20
217 157.81 atmosphere 995.0 43200 < th dose independent rect. 12 11
236 157.87 atmosphere 995.0 43200 > th dose independent sin 19 NA
245 157.90 wind 5.0 43200 > th dose dependent rect. 18 9
260 157.95 atmosphere 1000.0 1440 > th dose independent rect. 8 1
266 157.98 atmosphere 995.0 43200 > th dose independent rect. 13 9
268 158.00 wind 3.0 43200 > th dose dependent rect. 23 1
269 158.02 radiation 10.0 14400 < th dose independent rect. 17 3
272 158.03 temperature 15.0 720 > th dose independent rect. 19 4
277 158.04 precipitation 0.1 1440 > th dose dependent rect. 7 11
280 158.06 radiation 10.0 14400 < th dose independent rect. 17 6
288 158.10 atmosphere 995.0 43200 < th dose independent sin 19 NA
290 158.11 temperature 20.0 720 > th dose independent rect. 11 4
298 158.12 temperature 15.0 10 > th dose dependent rect. 20 6
309 158.16 precipitation 0.1 1440 > th dose dependent rect. 9 9
317 158.20 wind 5.0 43200 > th dose dependent rect. 18 6
330 158.24 atmosphere 995.0 43200 > th dose independent rect. 10 14
336 158.26 precipitation 0.1 1440 > th dose independent rect. 14 4
376 158.41 wind 9.0 14400 > th dose independent rect. 19 15
377 158.41 temperature 15.0 720 > th dose independent rect. 11 20
399 158.47 precipitation 0.1 1440 > th dose dependent rect. 16 1
405 158.48 wind 9.0 14400 < th dose independent rect. 20 14
406 158.49 wind 9.0 43200 > th dose independent sin 12 NA
410 158.50 atmosphere 995.0 43200 > th dose independent rect. 6 18
433 158.56 atmosphere 995.0 43200 < th dose dependent rect. 15 7
464 158.66 wind 9.0 43200 < th dose independent sin 12 NA
497 158.76 temperature 15.0 90 > th dose independent rect. 19 6
503 158.77 atmosphere 1000.0 1440 < th dose dependent rect. 8 1
508 158.78 precipitation 0.1 1440 > th dose independent rect. 10 8
518 158.79 atmosphere 995.0 43200 < th dose independent rect. 5 19
526 158.81 temperature 15.0 30 > th dose dependent rect. 20 13
540 158.87 atmosphere 1000.0 1440 < th dose independent rect. 8 1
543 158.87 radiation 20.0 14400 < th dose independent rect. 19 11
548 158.88 atmosphere 995.0 43200 > th dose independent rect. 3 16
556 158.89 wind 9.0 43200 > th dose dependent sin 13 NA
560 158.91 wind 5.0 43200 > th dose independent rect. 8 1
561 158.91 wind 5.0 43200 < th dose independent rect. 8 1
568 158.92 precipitation 0.1 1440 < th dose independent rect. 7 11
571 158.92 precipitation 0.1 1440 < th dose dependent rect. 7 11
573 158.93 atmosphere 1000.0 43200 > th dose independent rect. 7 1
609 159.01 temperature 20.0 10 > th dose independent rect. 20 6
611 159.01 atmosphere 1005.0 270 > th dose dependent rect. 1 1
615 159.02 atmosphere 1000.0 43200 < th dose independent rect. 6 1
652 159.07 atmosphere 1000.0 1440 > th dose independent rect. 8 4
664 159.09 atmosphere 1000.0 43200 > th dose independent rect. 9 1
666 159.09 atmosphere 1000.0 43200 > th dose independent rect. 6 6
672 159.10 atmosphere 1000.0 43200 < th dose independent rect. 6 6
723 159.16 radiation 10.0 4320 > th dose dependent rect. 17 14
727 159.17 radiation 10.0 4320 > th dose dependent rect. 5 2
744 159.18 atmosphere 995.0 43200 < th dose independent rect. 3 16
797 159.25 precipitation 0.1 1440 < th dose independent rect. 9 9
799 159.25 temperature 10.0 720 > th dose dependent rect. 19 4
800 159.25 precipitation 0.1 1440 < th dose dependent rect. 9 9
819 159.28 atmosphere 1000.0 43200 < th dose independent rect. 11 1
831 159.30 radiation 20.0 4320 < th dose independent rect. 16 15
858 159.34 atmosphere 1000.0 43200 > th dose independent rect. 11 1
872 159.35 atmosphere 995.0 43200 < th dose dependent rect. 14 9
875 159.36 precipitation 0.1 1440 > th dose independent rect. 16 1
883 159.36 temperature 10.0 270 > th dose dependent rect. 19 12
944 159.46 atmosphere 1000.0 1440 > th dose independent rect. 5 7
951 159.47 precipitation 0.1 1440 > th dose dependent rect. 14 4
959 159.48 wind 1.0 43200 > th dose independent rect. 3 15
971 159.50 wind 1.0 43200 > th dose independent rect. 3 13
977 159.51 atmosphere 1000.0 1440 > th dose independent rect. 3 9
981 159.51 temperature 15.0 720 > th dose independent rect. 3 20
982 159.51 radiation 1.0 14400 < th dose dependent rect. 23 4
990 159.53 temperature 15.0 270 > th dose independent rect. 19 12
996 159.54 humidity 80.0 43200 > th dose independent rect. 22 1